MirGeneDB 2.1

MirGeneDB ID

Lch-Mir-21

Family name MIR-21 (all species)
Seed AGCUUAU
Species Coelacanth (Latimeria chalumnae)
MiRBase ID
Paralogues
Orthologues Aca-Mir-21  Ami-Mir-21  Bta-Mir-21  Cfa-Mir-21  Cli-Mir-21  Cmi-Mir-21  Cpi-Mir-21  Cpo-Mir-21  Dno-Mir-21  Dre-Mir-21-P1  Dre-Mir-21-P2  Ebu-Mir-21  Ete-Mir-21  Gga-Mir-21  Gja-Mir-21  Gmo-Mir-21-P1  Gmo-Mir-21-P2  Hsa-Mir-21  Loc-Mir-21  Mal-Mir-21-P1  Mal-Mir-21-P2  Mdo-Mir-21  Mml-Mir-21  Mmu-Mir-21  Mun-Mir-21  Oan-Mir-21  Ocu-Mir-21  Pbv-Mir-21  Pma-Mir-21  Rno-Mir-21  Sha-Mir-21  Spt-Mir-21  Sto-Mir-21  Tgu-Mir-21  Tni-Mir-21-P1  Tni-Mir-21-P2  Xla-Mir-21-P3  Xla-Mir-21-P4  Xtr-Mir-21 
Node of Origin (locus) Vertebrata
Node of Origin (family) Vertebrata
Genome context
(LatCha1_add)
JH126567.1: 623470-623529 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
AUACUUCCAUUAUUGUACCAUCCUGUCGGAUAGCUUAUCAGACUGGUGUUGGCUGUUAGAUCACAUGGCGACAACAGUCGGUAGGCUGUCUGACAUUUUGGUGUCUUUCAUCAGAGCUAC
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Structure
        10          20        30        40        50        60
AUACUUCCAUUAUUGUA--|  UCC                A     G     G UGUUAG 
                   CCA   UGUCGGAUAGCUUAUC GACUG UGUUG C      A
                   GGU   ACAGUCUGUCGGAUGG CUGAC ACAGC G      U
CAUCGAGACUACUUUCUGU^  UUU                -     A     - GUACAC 
.       110       100        90        80         70
Deep sequencing
3' NTU Unknown
MotifsUGUG in loop
Mature sequence

Lch-Mir-21_5p (predicted)

mirBase accessionNone
Sequence
0- UAGCUUAUCAGACUGGUGUUGGC -23
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Star sequence

Lch-Mir-21_3p* (predicted)

mirBase accessionNone
Sequence
38- CGACAACAGUCGGUAGGCUGUC -60
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