MirGeneDB ID | Cpi-Mir-21 |
Family name |
MIR-21 (all species) |
Seed |
AGCUUAU |
Species |
Western painted turtle (Chrysemys picta bellii) |
MiRBase ID |
cpi-mir-21
|
Paralogues |
|
Orthologues |
Aca-Mir-21
Ami-Mir-21
Bta-Mir-21
Cfa-Mir-21
Cli-Mir-21
Cmi-Mir-21
Cpo-Mir-21
Dno-Mir-21
Dre-Mir-21-P1
Dre-Mir-21-P2
Ebu-Mir-21
Ete-Mir-21
Gga-Mir-21
Gja-Mir-21
Gmo-Mir-21-P1
Gmo-Mir-21-P2
Hsa-Mir-21
Lch-Mir-21
Loc-Mir-21
Mal-Mir-21-P1
Mal-Mir-21-P2
Mdo-Mir-21
Mml-Mir-21
Mmu-Mir-21
Mun-Mir-21
Oan-Mir-21
Ocu-Mir-21
Pbv-Mir-21
Pma-Mir-21
Rno-Mir-21
Sha-Mir-21
Spt-Mir-21
Sto-Mir-21
Tgu-Mir-21
Tni-Mir-21-P1
Tni-Mir-21-P2
Xla-Mir-21-P3
Xla-Mir-21-P4
Xtr-Mir-21
|
Node of Origin (locus) |
Vertebrata
|
Node of Origin (family) |
Vertebrata
|
Genome context (chrPic1) |
JH584693: 676463-676522 [+]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
ACAUCUCCAUGGCUGUACCAUCCUGUCGGAUAGCUUAUCAGACUGAUGUUGACUGUUGGAUCUCAUGGCAACAACAGUCGGUAGGCUGUCUGACAUUUUGGUAUCUUUCAUCUGACCGUU
Get precursor sequence
|
Structure | 10 20 30 40 50 60
ACAUCUCCAUGGCUGUA--| UCC A A A UGUUGG
CCA UGUCGGAUAGCUUAUC GACUG UGUUG C A
GGU ACAGUCUGUCGGAUGG CUGAC ACAAC G U
UUGCCAGUCUACUUUCUAU^ UUU - A - GUACUC
. 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
Comment | There are Dicer cuts +1 and +2 on the 3p arm. |
3' NTU |
No
|
Motifs | UGUG in loop |
Tissue expression
|
|
Mature sequence |
Cpi-Mir-21_5p |
mirBase accession | MIMAT0037651 |
Sequence |
0- UAGCUUAUCAGACUGAUGUUGAC -23
Get sequence
|
Star sequence |
Cpi-Mir-21_3p* |
mirBase accession | MIMAT0037652 |
Sequence |
38- CAACAACAGUCGGUAGGCUGUC -60
Get sequence
|