MirGeneDB 2.1
MirGeneDB ID

Gja-Mir-21

Family name MIR-21 (all species)
Seed AGCUUAU
Species Schlegels Japanese gecko (Gekko japonicus)
MiRBase ID
Paralogues
Orthologues Aca-Mir-21  Ami-Mir-21  Bta-Mir-21  Cfa-Mir-21  Cli-Mir-21  Cmi-Mir-21  Cpi-Mir-21  Cpo-Mir-21  Dno-Mir-21  Dre-Mir-21-P1  Dre-Mir-21-P2  Ebu-Mir-21  Ete-Mir-21  Gga-Mir-21  Gmo-Mir-21-P1  Gmo-Mir-21-P2  Hsa-Mir-21  Lch-Mir-21  Loc-Mir-21  Mal-Mir-21-P1  Mal-Mir-21-P2  Mdo-Mir-21  Mml-Mir-21  Mmu-Mir-21  Mun-Mir-21  Oan-Mir-21  Ocu-Mir-21  Pbv-Mir-21  Pma-Mir-21  Rno-Mir-21  Sha-Mir-21  Spt-Mir-21  Sto-Mir-21  Tgu-Mir-21  Tni-Mir-21-P1  Tni-Mir-21-P2  Xla-Mir-21-P3  Xla-Mir-21-P4  Xtr-Mir-21 
Node of Origin (locus) Vertebrata
Node of Origin (family) Vertebrata
Genome context
(GCF_001447785.1_Gekko_japonicus)		 NW_015175984.1: 334061-334120 [+]
Precursor
(pre-Mir +30nt flank)
CGUCGCCAUGGCCUGUACCUUUCUGUCGGAUAGCUUAUCAGACUGAUGUUGACUGUUGGAUCUCAUGGCAACAACAGUCGGUAGGCUGUCUGACAUUUUGGUAUCUUUCAUCAUGACUGU
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Structure
        10          20        30        40        50        60
CGUCGCCAUGGCCUGUA--| UUUC                A     A     A  GUUGG 
                   CC    UGUCGGAUAGCUUAUC GACUG UGUUG CU     A
                   GG    ACAGUCUGUCGGAUGG CUGAC ACAAC GG     U
UGUCAGUACUACUUUCUAU^ UUUU                -     A     -  UACUC 
.       110       100        90        80         70
Deep sequencing
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CommentThere is a second Dicer cut -1 on both arms.
3' NTU No
MotifsNo
Tissue expression
-   +
To
Mature sequence

Gja-Mir-21_5p
mirBase accessionNone
Sequence 
0- UAGCUUAUCAGACUGAUGUUGACU -24
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Star sequence

Gja-Mir-21_3p*
mirBase accessionNone
Sequence 
38- CAACAACAGUCGGUAGGCUGUC -60
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