MirGeneDB ID | Ami-Mir-21 |
Family name |
MIR-21 (all species) |
Species |
American alligator (Alligator mississippiensis) |
MiRBase ID |
ami-mir-21
|
Paralogues |
|
Orthologues |
Aca-Mir-21
Bta-Mir-21
Cfa-Mir-21
Cja-Mir-21
Cli-Mir-21
Cmi-Mir-21
Cpi-Mir-21
Cpo-Mir-21
Dno-Mir-21
Dre-Mir-21-P1
Dre-Mir-21-P2
Ebu-Mir-21
Eca-Mir-21
Ete-Mir-21
Gga-Mir-21
Gja-Mir-21
Gmo-Mir-21-P1
Gmo-Mir-21-P2
Hsa-Mir-21
Laf-Mir-21
Lch-Mir-21
Loc-Mir-21
Mal-Mir-21-P1
Mal-Mir-21-P2
Mdo-Mir-21
Mml-Mir-21
Mmr-Mir-21
Mmu-Mir-21
Mun-Mir-21
Neu-Mir-21
Oan-Mir-21
Ocu-Mir-21
Pab-Mir-21
Pbv-Mir-21
Pma-Mir-21
Rno-Mir-21
Sha-Mir-21
Spt-Mir-21
Sto-Mir-21
Tgu-Mir-21
Tni-Mir-21-P1
Tni-Mir-21-P2
Xla-Mir-21-P3
Xla-Mir-21-P4
Xtr-Mir-21
|
Node of Origin (locus) |
Vertebrata
|
Node of Origin (family) |
Vertebrata
|
Genome context (GCF_000281125.3_ASM28112v4_AMI_add) |
NW_017711418.1: 13769097-13769156 [-]
UCSC
|
Seed |
AGCUUAU |
Precursor (pre-Mir +30nt flank) |
ACAUCUCCAUGGCUGUACCAUCCUGUCGGAUAGCUUAUCAGACUGAUGUUGACUGUUGGAUGUCAUGGCAACAACAGUCGGUAGGCUGUCUGACAUUUUGGUAUCUUUCAUCUGACCGUU
Get precursor sequence
|
Structure | 10 20 30 40 50 60
ACAUCUCCAUGGCUGUA--| UCC A A A UGUUGG
CCA UGUCGGAUAGCUUAUC GACUG UGUUG C A
GGU ACAGUCUGUCGGAUGG CUGAC ACAAC G U
UUGCCAGUCUACUUUCUAU^ UUU - A - GUACUG
. 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
Comment | There are Dicer cuts +1 and +2 on the 3p arm. |
3' NTU |
No
|
Motifs | UGUG in loop |
Tissue expression
|
|
Mature sequence |
Ami-Mir-21_5p |
mirBase accession | MIMAT0038056 |
Sequence |
0- UAGCUUAUCAGACUGAUGUUGAC -23
Get sequence
|
Star sequence |
Ami-Mir-21_3p* |
mirBase accession | MIMAT0038057 |
Sequence |
38- CAACAACAGUCGGUAGGCUGUC -60
Get sequence
|