MirGeneDB 3.0
MirGeneDB ID

Gmo-Mir-21-P2

Family name MIR-21 (all species)
Species Cod (Gadus morhua)
MiRBase ID gmo-mir-21-1
Paralogues Gmo-Mir-21-P1 
Orthologues Aca-Mir-21  Ami-Mir-21  Bta-Mir-21  Cfa-Mir-21  Cja-Mir-21  Cli-Mir-21  Cmi-Mir-21  Cpi-Mir-21  Cpo-Mir-21  Dno-Mir-21  Dre-Mir-21-P2  Ebu-Mir-21  Eca-Mir-21  Ete-Mir-21  Gga-Mir-21  Gja-Mir-21  Hsa-Mir-21  Laf-Mir-21  Lch-Mir-21  Loc-Mir-21  Mal-Mir-21-P2  Mdo-Mir-21  Mml-Mir-21  Mmr-Mir-21  Mmu-Mir-21  Mun-Mir-21  Neu-Mir-21  Oan-Mir-21  Ocu-Mir-21  Pab-Mir-21  Pbv-Mir-21  Pma-Mir-21  Rno-Mir-21  Sha-Mir-21  Spt-Mir-21  Sto-Mir-21  Tgu-Mir-21  Tni-Mir-21-P2  Xtr-Mir-21 
Node of Origin (locus) Clupeocephala
Node of Origin (family) Vertebrata
Genome context
(Gadus_morhua.gadMor1.dna.toplevel)		 GeneScaffold_4430: 429767-429827 [+] UCSC Ensembl
Seed AGCUUAU
Precursor
(pre-Mir +30nt flank)		 
UGGCGCCUUGCUCUCUCCCGUCCCGUCAGCUAGCUUAUCAGACUGGUGUUGGCUGCUCUAUUGUCACGGCAACAACGGUCUGUAAGCUGGCUGAAGUUCUGGGCCAACGGCUUUGUCCACA
Get precursor sequence
Structure
        10          20        30        40        50        60 
UGGCGCCUUGCUCUCUC--|  UCCCG            U       G     G UGCUCUA 
                   CCG     UCAGCUAGCUUA CAGACUG UGUUG C       \
                   GGU     AGUCGGUCGAAU GUCUGGC ACAAC G       U
ACACCUGUUUCGGCAACCG^  CUUGA            -       A     - GCACUGU 
 .       110       100        90         80        70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
Br Gi He In Li Sk Sp Wh
Mature sequence

Gmo-Mir-21-P2_5p
mirBase accessionMIMAT0044033
Sequence 
0- UAGCUUAUCAGACUGGUGUUGGC -23
Get sequence
Star sequence

Gmo-Mir-21-P2_3p*
mirBase accessionNone
Sequence 
39- CAACAACGGUCUGUAAGCUGGC -61
Get sequence