Mir-138-o2

MirGeneDB ID

Pma-Mir-138-o2

Family name

MIR-138 (all species)

Species

Sea Lamprey (Petromyzon marinus)

MiRBase ID

Paralogues

Pma-Mir-138-o1 Pma-Mir-138-o3

Orthologues

Aca-Mir-138-P2 Ami-Mir-138-P2 Bta-Mir-138-P2 Cfa-Mir-138-P2 Cja-Mir-138-P2 Cli-Mir-138-P2 Cmi-Mir-138-P2 Cpi-Mir-138-P2 Cpo-Mir-138-P2 Dno-Mir-138-P2 Dre-Mir-138-P2 Eca-Mir-138-P2 Ete-Mir-138-P2 Gga-Mir-138-P2 Gja-Mir-138-P2 Gmo-Mir-138-P2 Hsa-Mir-138-P2 Laf-Mir-138-P2 Lch-Mir-138-P2 Loc-Mir-138-P2 Mal-Mir-138-P2 Mdo-Mir-138-P2 Mml-Mir-138-P2 Mmr-Mir-138-P2 Mmu-Mir-138-P2 Neu-Mir-138-P2 Oan-Mir-138-P2 Ocu-Mir-138-P2 Pab-Mir-138-P2 Pbv-Mir-138-P2 Rno-Mir-138-P2 Sha-Mir-138-P2 Spt-Mir-138-P2 Sto-Mir-138-P2 Tgu-Mir-138-P2 Tni-Mir-138-P2

Node of Origin (locus)

P. marinus

Node of Origin (family)

Vertebrata

Genome context
(GCF_010993605.1_kPetMar1.pri_genomic)

NC_046088.1: 7504922-7504989 [+] UCSC Ensembl

Seed

GCUGGUG

Precursor
(pre-Mir +30nt flank)

AGGGUUCUCUGGGCCCCGGUGCAGCGGUGCAGCUGGUGUUGUGAAUCAGGCUGAAGCCGCAGUGCUCCAAACACUGGCCGUUUCACCACGCCAGCCCACUGCCGCACCACACUCACCAACCAUCGCCG

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Structure

        10           20        30        40        50        60    
AGGGUUCUCUGGGCCCC---|    A      CA        U     UCA    GAAGCCGCAGU 
                    GGUGC GCGGUG  GCUGGUGU GUGAA   GGCU           \
                    CCACG CGUCAC  CGACCGCA CACUU   CCGG           G
GCCGCUACCAACCACUCACA^    C      C-        C     UG-    UCACAAACCUC 
      120       110       100         90        80         70

Deep sequencing

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3' NTU

Yes

Motifs

CNNC at 3p(+17)

Tissue expression

Br	Gi	Gu	He	Ki	La	Li	Mo	Mu	Sk

Mature sequence

Pma-Mir-138-o2_5p

mirBase accession

None

Sequence

0- AGCUGGUGUUGUGAAUCAGGCUG -23

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Star sequence

Pma-Mir-138-o2_3p*

mirBase accession

None

Sequence

46- GCCGUUUCACCACGCCAGCCCA -68

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