MirGeneDB 2.1
MirGeneDB ID

Pma-Mir-138-o2

Family name MIR-138 (all species)
Seed GCUGGUG
Species Sea Lamprey (Petromyzon marinus)
MiRBase ID
Paralogues Pma-Mir-138-o1  Pma-Mir-138-o3 
Orthologues Aca-Mir-138-P2  Ami-Mir-138-P2  Bta-Mir-138-P2  Cfa-Mir-138-P2  Cli-Mir-138-P2  Cmi-Mir-138-P2  Cpi-Mir-138-P2  Cpo-Mir-138-P2  Dno-Mir-138-P2  Dre-Mir-138-P2  Ete-Mir-138-P2  Gga-Mir-138-P2  Gja-Mir-138-P2  Gmo-Mir-138-P2  Hsa-Mir-138-P2  Lch-Mir-138-P2  Loc-Mir-138-P2  Mal-Mir-138-P2  Mdo-Mir-138-P2  Mml-Mir-138-P2  Mmu-Mir-138-P2  Oan-Mir-138-P2  Ocu-Mir-138-P2  Pbv-Mir-138-P2  Rno-Mir-138-P2  Sha-Mir-138-P2  Spt-Mir-138-P2  Sto-Mir-138-P2  Tgu-Mir-138-P2  Tni-Mir-138-P2 
Node of Origin (locus) P. marinus
Node of Origin (family) Vertebrata
Genome context
(GCF_010993605.1_kPetMar1.pri_genomic)		 NC_046088.1: 7504922-7504989 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AGGGUUCUCUGGGCCCCGGUGCAGCGGUGCAGCUGGUGUUGUGAAUCAGGCUGAAGCCGCAGUGCUCCAAACACUGGCCGUUUCACCACGCCAGCCCACUGCCGCACCACACUCACCAACCAUCGCCG
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Structure
        10           20        30        40        50        60    
AGGGUUCUCUGGGCCCC---|    A      CA        U     UCA    GAAGCCGCAGU 
                    GGUGC GCGGUG  GCUGGUGU GUGAA   GGCU           \
                    CCACG CGUCAC  CGACCGCA CACUU   CCGG           G
GCCGCUACCAACCACUCACA^    C      C-        C     UG-    UCACAAACCUC 
      120       110       100         90        80         70
Deep sequencing
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3' NTU Unknown
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Br Gi Gu He Ki La Li Mo Mu Sk
Mature sequence

Pma-Mir-138-o2_5p
mirBase accessionNone
Sequence 
0- AGCUGGUGUUGUGAAUCAGGCUG -23
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Star sequence

Pma-Mir-138-o2_3p* (predicted)
mirBase accessionNone
Sequence 
46- GCCGUUUCACCACGCCAGCCCA -68
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