| MirGeneDB ID | Bta-Mir-138-P2 |
|---|
| Family name |
MIR-138 (all species) |
|---|
| Seed |
GCUGGUG |
|---|
| Species |
Cow (Bos taurus) |
|---|
| MiRBase ID |
bta-mir-138-2
|
|---|
| Paralogues |
Bta-Mir-138-P1
|
|---|
| Orthologues |
Aca-Mir-138-P2
Ami-Mir-138-P2
Cfa-Mir-138-P2
Cli-Mir-138-P2
Cmi-Mir-138-P2
Cpi-Mir-138-P2
Cpo-Mir-138-P2
Dno-Mir-138-P2
Dre-Mir-138-P2
Ete-Mir-138-P2
Gga-Mir-138-P2
Gja-Mir-138-P2
Gmo-Mir-138-P2
Hsa-Mir-138-P2
Lch-Mir-138-P2
Loc-Mir-138-P2
Mal-Mir-138-P2
Mdo-Mir-138-P2
Mml-Mir-138-P2
Mmu-Mir-138-P2
Oan-Mir-138-P2
Ocu-Mir-138-P2
Pbv-Mir-138-P2
Pma-Mir-138-o2
Rno-Mir-138-P2
Sha-Mir-138-P2
Spt-Mir-138-P2
Sto-Mir-138-P2
Tgu-Mir-138-P2
Tni-Mir-138-P2
|
|---|
| Node of Origin (locus) |
Vertebrata
|
|---|
| Node of Origin (family) |
Vertebrata
|
|---|
Genome context
(GCF_002263795.1_ARS-UCD1.2_BTA) |
NC_037345.1: 24910582-24910649 [+]
UCSC
Ensembl
|
|---|
Precursor
(pre-Mir +30nt flank) |
AGCGCGCCCGAGUUCUGGUAUCGUUGCUGCAGCUGGUGUUGUGAAUCAGGCCGACGAGCAGCGCAUCCUCUUACCCGGCUAUUUCACGACACCAGGGUUGCAUCAUACCCAUCCUCUCCAGGCGAGCC
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
AGCGCGCCCGAGUUCUG---| CGU U AG UCA ACGAGCAGCG
GUAU UGC GC CUGGUGUUGUGAA GGCCG C
CAUA ACG UG GACCACAGCACUU UCGGC A
CCGAGCGGACCUCUCCUACC^ CU- U G- UA- CCAUUCUCCU
120 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | CNNC at 3p(+17) |
|---|
Tissue expression
|
| Ad |
Cd |
Fe |
Bo |
Br |
Ce |
Co |
Co |
De |
He |
Hy |
Ir |
Ki |
La |
Lo |
No |
Op |
Or |
Pe |
Re |
Su |
Te |
| |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|---|
| Mature sequence |
Bta-Mir-138-P2_5p |
| mirBase accession | MIMAT0003813 |
|---|
| Sequence |
0- AGCUGGUGUUGUGAAUCAGGCCG -23
Get sequence
|
|---|
| Proposed targets |
TargetScanVert: bta-miR-138
|
|---|
| Star sequence |
Bta-Mir-138-P2_3p* |
| mirBase accession | None |
|---|
| Sequence |
47- GCUAUUUCACGACACCAGGGU -68
Get sequence
|
|---|
