| MirGeneDB ID | Gmo-Mir-138-P2 |
|---|
| Family name |
MIR-138 (all species) |
|---|
| Seed |
GCUGGUG |
|---|
| Species |
Cod (Gadus morhua) |
|---|
| MiRBase ID |
gmo-mir-138-1
|
|---|
| Paralogues |
Gmo-Mir-138-P1a
Gmo-Mir-138-P1b
|
|---|
| Orthologues |
Aca-Mir-138-P2
Ami-Mir-138-P2
Bta-Mir-138-P2
Cfa-Mir-138-P2
Cli-Mir-138-P2
Cmi-Mir-138-P2
Cpi-Mir-138-P2
Cpo-Mir-138-P2
Dno-Mir-138-P2
Dre-Mir-138-P2
Ete-Mir-138-P2
Gga-Mir-138-P2
Gja-Mir-138-P2
Hsa-Mir-138-P2
Lch-Mir-138-P2
Loc-Mir-138-P2
Mal-Mir-138-P2
Mdo-Mir-138-P2
Mml-Mir-138-P2
Mmu-Mir-138-P2
Oan-Mir-138-P2
Ocu-Mir-138-P2
Pbv-Mir-138-P2
Pma-Mir-138-o2
Rno-Mir-138-P2
Sha-Mir-138-P2
Spt-Mir-138-P2
Sto-Mir-138-P2
Tgu-Mir-138-P2
Tni-Mir-138-P2
|
|---|
| Node of Origin (locus) |
Vertebrata
|
|---|
| Node of Origin (family) |
Vertebrata
|
|---|
Genome context
(Gadus_morhua.gadMor1.dna.toplevel) |
GeneScaffold_606: 3847-3912 [-]
UCSC
Ensembl
|
|---|
Precursor
(pre-Mir +30nt flank) |
GAAGAGAUGUGUGUUGGGUGUGUGCGCUGCAGCUGGUGUUGUGAAUCAGGCCGACGACCGACACUUUGAUUACCGGCUACUUCACAACACCAGGGUAGUACCACACCAAUGUCUACAAGACCCGCC
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
GAAGAGAUGUGUGUUGG---| UGC AG UCA ACGACCGAC
GUGUG GCUGC CUGGUGUUGUGAA GGCCG A
CACAC UGAUG GACCACAACACUU UCGGC C
CCGCCCAGAACAUCUGUAAC^ CA- G- CA- CAUUAGUUU
120 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | CNNC at 3p(+17) |
|---|
Tissue expression
|
|
|---|
| Mature sequence |
Gmo-Mir-138-P2_5p |
| mirBase accession | MIMAT0044223 |
|---|
| Sequence |
0- AGCUGGUGUUGUGAAUCAGGCCG -23
Get sequence
|
|---|
| Star sequence |
Gmo-Mir-138-P2_3p* |
| mirBase accession | None |
|---|
| Sequence |
45- GCUACUUCACAACACCAGGGU -66
Get sequence
|
|---|
