| MirGeneDB ID | Mdo-Mir-138-P2 |
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| Family name |
MIR-138 (all species) |
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| Species |
Gray short-tailed opossum (Monodelphis domestica) |
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| MiRBase ID |
mdo-mir-138
|
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| Paralogues |
Mdo-Mir-138-P1
|
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| Orthologues |
Aca-Mir-138-P2
Ami-Mir-138-P2
Bta-Mir-138-P2
Cfa-Mir-138-P2
Cja-Mir-138-P2
Cli-Mir-138-P2
Cmi-Mir-138-P2
Cpi-Mir-138-P2
Cpo-Mir-138-P2
Dno-Mir-138-P2
Dre-Mir-138-P2
Eca-Mir-138-P2
Ete-Mir-138-P2
Gga-Mir-138-P2
Gja-Mir-138-P2
Gmo-Mir-138-P2
Hsa-Mir-138-P2
Laf-Mir-138-P2
Lch-Mir-138-P2
Loc-Mir-138-P2
Mal-Mir-138-P2
Mml-Mir-138-P2
Mmr-Mir-138-P2
Mmu-Mir-138-P2
Neu-Mir-138-P2
Oan-Mir-138-P2
Ocu-Mir-138-P2
Pab-Mir-138-P2
Pbv-Mir-138-P2
Pma-Mir-138-o2
Rno-Mir-138-P2
Sha-Mir-138-P2
Spt-Mir-138-P2
Sto-Mir-138-P2
Tgu-Mir-138-P2
Tni-Mir-138-P2
|
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| Node of Origin (locus) |
Vertebrata
|
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| Node of Origin (family) |
Vertebrata
|
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Genome context
(monDom5_add) |
1: 447811949-447812016 [+]
UCSC
Ensembl
|
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| Seed |
GCUGGUG |
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Precursor
(pre-Mir +30nt flank) |
AGCCACCACGGAUUCUGGUAUUGUUGCUGCAGCUGGUGUUGUGAAUCAGGCCGACAAGCAGCUCAUCCUAUUACCCGGCUAUUUCACUACACCAGGGUUGCAUCAUACCGCUCUCCUUCAGAAGGCUG
Get precursor sequence
|
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| Structure | 10 20 30 40 50 60
AGCCACCACGGAUUCUG---| U U U AG U UCA ACAAGCAGCU
GUAU G UGC GC CUGGUGU GUGAA GGCCG C
CAUA C ACG UG GACCACA CACUU UCGGC A
GUCGGAAGACUUCCUCUCGC^ - U U G- U UA- CCAUUAUCCU
120 110 100 90 80 70 |
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| Deep sequencing |
Go to detailed chart
|
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| Comment | Although usually templated it is assummed that Mir-138-P2 is often a Group 2 miRNA given the available 3' DcRNA reads as well as a mutation in python and some of the fish at the very 3' terminus that supports the terminal addition of the 3' uridine. |
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| 3' NTU |
Yes
|
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
|
|
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| Mature sequence |
Mdo-Mir-138-P2_5p |
| mirBase accession | MIMAT0004111 |
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| Sequence |
0- AGCUGGUGUUGUGAAUCAGGCCG -23
Get sequence
|
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| Proposed targets |
TargetScanVert: mdo-miR-138
|
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| Star sequence |
Mdo-Mir-138-P2_3p* |
| mirBase accession | None |
|---|
| Sequence |
47- GCUAUUUCACUACACCAGGGU -68
Get sequence
|
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