| MirGeneDB ID | Sha-Mir-138-P2 |
|---|
| Family name |
MIR-138 (all species) |
|---|
| Seed |
GCUGGUG |
|---|
| Species |
Tasmanian devil (Sarcophilus harrisii) |
|---|
| MiRBase ID |
sha-mir-138-1
|
|---|
| Paralogues |
Sha-Mir-138-P1
|
|---|
| Orthologues |
Aca-Mir-138-P2
Ami-Mir-138-P2
Bta-Mir-138-P2
Cfa-Mir-138-P2
Cli-Mir-138-P2
Cmi-Mir-138-P2
Cpi-Mir-138-P2
Cpo-Mir-138-P2
Dno-Mir-138-P2
Dre-Mir-138-P2
Ete-Mir-138-P2
Gga-Mir-138-P2
Gja-Mir-138-P2
Gmo-Mir-138-P2
Hsa-Mir-138-P2
Lch-Mir-138-P2
Loc-Mir-138-P2
Mal-Mir-138-P2
Mdo-Mir-138-P2
Mml-Mir-138-P2
Mmu-Mir-138-P2
Oan-Mir-138-P2
Ocu-Mir-138-P2
Pbv-Mir-138-P2
Pma-Mir-138-o2
Rno-Mir-138-P2
Spt-Mir-138-P2
Sto-Mir-138-P2
Tgu-Mir-138-P2
Tni-Mir-138-P2
|
|---|
| Node of Origin (locus) |
Vertebrata
|
|---|
| Node of Origin (family) |
Vertebrata
|
|---|
Genome context
(DEVIL_add) |
GL834650.1: 1024477-1024544 [+]
UCSC
Ensembl
|
|---|
Precursor
(pre-Mir +30nt flank) |
CAGCCCCCACAGAUUCUGGUACGUUGCUGCAGCUGGUGUUGUGAAUCAGGCCGACAAGCAGCUCAUCCUAUUACCCGGCUAUUUCACCACACCAGGGUUGCAUCAUACCGCUCUCCUUCAGAAGGCUG
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
CAGCCCCCACAGAUUCU--| CGU U AG U UCA ACAAGCAGCU
GGUA UGC GC CUGGUGU GUGAA GGCCG C
CCAU ACG UG GACCACA CACUU UCGGC A
GUCGGAAGACUUCCUCUCG^ ACU U G- C UA- CCAUUAUCCU
120 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | UG at 5p(-14), CNNC at 3p(+17) |
|---|
Tissue expression
|
| Bo |
Br |
He |
Ki |
Li |
Ly |
Pa |
Sk |
Sp |
Te |
| |
|
|
|
|
|
|
|
|
|
|
|---|
| Mature sequence |
Sha-Mir-138-P2_5p |
| mirBase accession | MIMAT0022771 |
|---|
| Sequence |
0- AGCUGGUGUUGUGAAUCAGGCCG -23
Get sequence
|
|---|
| Star sequence |
Sha-Mir-138-P2_3p* |
| mirBase accession | None |
|---|
| Sequence |
47- GCUAUUUCACCACACCAGGGU -68
Get sequence
|
|---|
