| MirGeneDB ID | Pma-Mir-138-o3 |
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| Family name |
MIR-138 (all species) |
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| Species |
Sea Lamprey (Petromyzon marinus) |
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| MiRBase ID |
pma-mir-138b
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| Paralogues |
Pma-Mir-138-o1
Pma-Mir-138-o2
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| Orthologues |
Ebu-Mir-138-P3
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| Node of Origin (locus) |
P. marinus
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| Node of Origin (family) |
Vertebrata
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Genome context
(GCF_010993605.1_kPetMar1.pri_genomic) |
NC_046113.1: 8496747-8496809 [+]
UCSC
Ensembl
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| Seed |
GCUGGUG |
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Precursor
(pre-Mir +30nt flank) |
CGGGGCCCCCGCCACUUGGUGCCGUGCCGCAGCUGGUGUUGUGAAUCAGGCUGAUCCUCUCCUGCUCCUCCGCCGCUUCACAGCACCGGCACGGCACGGCCGCCGCAUCGCCACUGUGCAUCG
Get precursor sequence
|
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| Structure | 10 20 30 40 50 60
CGGGGCCCCCGCCACUU-- -| CA UCA U AUCCUCU
GGU GCCGUGCCG GCUGGUGUUGUGAA GGC G C
CCG CGGCACGGC CGGCCACGACACUU CCG C C
GCUACGUGUCACCGCUACG C^ A- CG- C UCCUCGU
120 110 100 90 80 70 |
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| Deep sequencing |
Go to detailed chart
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| 3' NTU |
Unknown
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| Motifs | UG at 5p(-14), CNNC at 3p(+17) |
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Tissue expression
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| Br |
Gi |
Gu |
He |
Ki |
La |
Li |
Mo |
Mu |
Sk |
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| Mature sequence |
Pma-Mir-138-o3_5p |
| mirBase accession | MIMAT0019470 |
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| Sequence |
0- AGCUGGUGUUGUGAAUCAGGCUG -23
Get sequence
|
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| Star sequence |
Pma-Mir-138-o3_3p* (predicted) |
| mirBase accession | None |
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| Sequence |
41- GCCGCUUCACAGCACCGGCACG -63
Get sequence
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