MirGeneDB 3.0
MirGeneDB ID

Ocu-Mir-199-P3

Family name MIR-199 (all species)
Species Rabbit (Oryctolagus cuniculus)
MiRBase ID ocu-mir-199a-1
Paralogues Ocu-Mir-199-P1-v1  Ocu-Mir-199-P2-v1  Ocu-Mir-199-P3-v1 
Orthologues Aca-Mir-199-P3-v1  Ami-Mir-199-P3-v1  Bta-Mir-199-P3-v1  Cfa-Mir-199-P3-v1  Cja-Mir-199-P3-v1  Cpi-Mir-199-P3-v1  Cpo-Mir-199-P3-v1  Dre-Mir-199-P3-v1  Eca-Mir-199-P3-v1  Ete-Mir-199-P3-v1  Gja-Mir-199-P3-v1  Gmo-Mir-199-P3-v1  Hsa-Mir-199-P3-v1  Laf-Mir-199-P3-v1  Lch-Mir-199-P3  Loc-Mir-199-P3-v1  Mal-Mir-199-P3-v1  Mdo-Mir-199-P3-v1  Mml-Mir-199-P3-v1  Mmr-Mir-199-P3-v1  Mmu-Mir-199-P3-v1  Mun-Mir-199-P3-v1  Neu-Mir-199-P3-v1  Pab-Mir-199-P3-v1  Pbv-Mir-199-P3-v1  Pma-Mir-199-o3  Sha-Mir-199-P3-v1  Tni-Mir-199-P3-v1  Xla-Mir-199-P3a  Xla-Mir-199-P3b  Xtr-Mir-199-P3 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(oryCun2_add)		 chrUn0216: 201980-202042 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-199-P3-v2)		 Mir-199-P3-v1 chrUn0216: 201980-202042 [+] UCSC Ensembl
Mir-199-P3-v2 chrUn0216: 201980-202042 [+] UCSC Ensembl
Mir-199-P3-v3 chrUn0216: 201980-202042 [+] UCSC Ensembl
Variant

Ocu-Mir-199-P3-v2
Seed ACAGUAG
Precursor
(pre-Mir +30nt flank)		 
CUGGGGCCCCGAGACAGCCGGCCCCGCCCGCCCAGUGUUCAGACUACCUGUUCAGGGGACUCCAGAUGUGUACAGUAGUCUGCACAUUGGUUAGGCUGGGCCCGGGCCAGCGGCACGACGGAC
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Structure
        10          20        30        40        50        60 
CUGGGGCCCCGAGACAG-  -|    C   CGC       U        C   U  GGGGAC 
                  CC GGCCC GCC   CCAGUGU CAGACUAC UGU CA      U
                  GG CCGGG CGG   GGUUACA GUCUGAUG ACA GU      C
CAGGCAGCACGGCGACCG  C^    U   AUU       C        -   U  GUAGAC 
 120       110       100        90        80         70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
He Ki Te To Wh
Star sequence

Ocu-Mir-199-P3-v2_5p*
mirBase accessionMIMAT0048319
Sequence 
0- CCCAGUGUUCAGACUACCUGUUCA -24
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Mature sequence

Ocu-Mir-199-P3-v2_3p
mirBase accessionMIMAT0048320
Sequence 
40- UACAGUAGUCUGCACAUUGGUUA -63
Get sequence
Variant

Ocu-Mir-199-P3-v1
Seed CAGUAGU
Precursor
(pre-Mir +30nt flank)		 
CUGGGGCCCCGAGACAGCCGGCCCCGCCCGCCCAGUGUUCAGACUACCUGUUCAGGGGACUCCAGAUGUGUACAGUAGUCUGCACAUUGGUUAGGCUGGGCCCGGGCCAGCGGCACGACGGAC
Get precursor sequence
Structure
        10          20        30        40        50        60 
CUGGGGCCCCGAGACAG-  -|    C   CGC       U        C   U AGGGGAC 
                  CC GGCCC GCC   CCAGUGU CAGACUAC UGU C       U
                  GG CCGGG CGG   GGUUACA GUCUGAUG ACA G       C
CAGGCAGCACGGCGACCG  C^    U   AUU       C        -   U UGUAGAC 
 120       110       100        90        80         70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
He Ki Te To Wh
Star sequence

Ocu-Mir-199-P3-v1_5p*
mirBase accessionMIMAT0048319
Sequence 
0- CCCAGUGUUCAGACUACCUGUUC -23
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Mature sequence

Ocu-Mir-199-P3-v1_3p
mirBase accessionMIMAT0048320
Sequence 
41- ACAGUAGUCUGCACAUUGGUUA -63
Get sequence
Variant

Ocu-Mir-199-P3-v3
Seed AGUAGUC
Precursor
(pre-Mir +30nt flank)		 
CUGGGGCCCCGAGACAGCCGGCCCCGCCCGCCCAGUGUUCAGACUACCUGUUCAGGGGACUCCAGAUGUGUACAGUAGUCUGCACAUUGGUUAGGCUGGGCCCGGGCCAGCGGCACGACGGAC
Get precursor sequence
Structure
        10          20        30        40        50        60 
CUGGGGCCCCGAGACAG-  -|    C   CGC       U        C   UCAGGGGAC 
                  CC GGCCC GCC   CCAGUGU CAGACUAC UGU         U
                  GG CCGGG CGG   GGUUACA GUCUGAUG ACA         C
CAGGCAGCACGGCGACCG  C^    U   AUU       C        -   UGUGUAGAC 
 120       110       100        90        80         70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
He Ki Te To Wh
Star sequence

Ocu-Mir-199-P3-v3_5p*
mirBase accessionMIMAT0048319
Sequence 
0- CCCAGUGUUCAGACUACCUGUU -22
Get sequence
Mature sequence

Ocu-Mir-199-P3-v3_3p
mirBase accessionMIMAT0048320
Sequence 
42- CAGUAGUCUGCACAUUGGUUA -63
Get sequence