MirGeneDB 2.1

MirGeneDB ID

Mdo-Mir-199-P1-v3

Family name MIR-199 (all species)
Seed AGUAGUC
Species Gray short-tailed opossum (Monodelphis domestica)
MiRBase ID mdo-mir-199b-2
Paralogues Mdo-Mir-199-P1-v1  Mdo-Mir-199-P1-v2  Mdo-Mir-199-P2-v1  Mdo-Mir-199-P2-v2  Mdo-Mir-199-P2-v3  Mdo-Mir-199-P3-v1  Mdo-Mir-199-P3-v2  Mdo-Mir-199-P3-v3 
Orthologues Aca-Mir-199-P1-v1  Aca-Mir-199-P1-v2  Aca-Mir-199-P1-v3  Ami-Mir-199-P1-v1  Ami-Mir-199-P1-v2  Ami-Mir-199-P1-v3  Bta-Mir-199-P1-v1  Bta-Mir-199-P1-v2  Bta-Mir-199-P1-v3  Cfa-Mir-199-P1-v1  Cfa-Mir-199-P1-v2  Cfa-Mir-199-P1-v3  Cli-Mir-199-P1-v1  Cli-Mir-199-P1-v2  Cli-Mir-199-P1-v3  Cmi-Mir-199-P1-v1  Cmi-Mir-199-P1-v2  Cmi-Mir-199-P1-v3  Cpi-Mir-199-P1-v1  Cpi-Mir-199-P1-v2  Cpi-Mir-199-P1-v3  Cpo-Mir-199-P1-v1  Cpo-Mir-199-P1-v2  Cpo-Mir-199-P1-v3  Dno-Mir-199-P1-v1  Dno-Mir-199-P1-v2  Dno-Mir-199-P1-v3  Dre-Mir-199-P1a-v1  Dre-Mir-199-P1a-v2  Dre-Mir-199-P1a-v3  Ete-Mir-199-P1-v1  Ete-Mir-199-P1-v2  Ete-Mir-199-P1-v3  Gga-Mir-199-P1-v1  Gga-Mir-199-P1-v2  Gga-Mir-199-P1-v3  Gja-Mir-199-P1-v1  Gja-Mir-199-P1-v2  Gja-Mir-199-P1-v3  Gmo-Mir-199-P1a-v1  Gmo-Mir-199-P1a-v2  Gmo-Mir-199-P1a-v3  Gmo-Mir-199-P1b-v1  Gmo-Mir-199-P1b-v2  Gmo-Mir-199-P1b-v3  Hsa-Mir-199-P1-v1  Hsa-Mir-199-P1-v2  Hsa-Mir-199-P1-v3  Lch-Mir-199-P1  Loc-Mir-199-P1-v1  Loc-Mir-199-P1-v2  Mal-Mir-199-P1a-v1  Mal-Mir-199-P1a-v2  Mal-Mir-199-P1a-v3  Mal-Mir-199-P1b-as  Mal-Mir-199-P1b-v1  Mal-Mir-199-P1b-v2  Mal-Mir-199-P1b-v3  Mml-Mir-199-P1-v1  Mml-Mir-199-P1-v2  Mml-Mir-199-P1-v3  Mmu-Mir-199-P1-v1  Mmu-Mir-199-P1-v2  Mmu-Mir-199-P1-v3  Mun-Mir-199-P1-v1  Mun-Mir-199-P1-v2  Mun-Mir-199-P1-v3  Oan-Mir-199-P1-v1  Oan-Mir-199-P1-v2  Oan-Mir-199-P1-v3  Ocu-Mir-199-P1-v1  Ocu-Mir-199-P1-v2  Ocu-Mir-199-P1-v3  Pbv-Mir-199-P1-v1  Pbv-Mir-199-P1-v2  Pbv-Mir-199-P1-v3  Pma-Mir-199-o1  Rno-Mir-199-P1-v1  Rno-Mir-199-P1-v2  Rno-Mir-199-P1-v3  Sha-Mir-199-P1-v1  Sha-Mir-199-P1-v2  Sha-Mir-199-P1-v3  Spt-Mir-199-P1  Sto-Mir-199-P1-v1  Sto-Mir-199-P1-v2  Sto-Mir-199-P1-v3  Tgu-Mir-199-P1-v1  Tgu-Mir-199-P1-v2  Tgu-Mir-199-P1-v3  Tni-Mir-199-P1b-v1  Tni-Mir-199-P1b-v2  Tni-Mir-199-P1b-v3  Xla-Mir-199-P1c-v1  Xla-Mir-199-P1c-v2  Xla-Mir-199-P1c-v3  Xla-Mir-199-P1d-v1  Xla-Mir-199-P1d-v2  Xla-Mir-199-P1d-v3  Xtr-Mir-199-P1-v1  Xtr-Mir-199-P1-v2  Xtr-Mir-199-P1-v3 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(monDom5_add)
2: 64374174-64374234 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-199-P1-v3)
Mir-214-v1 2: 64368096-64368158 [-] UCSC Ensembl
Mir-214-v2 2: 64368096-64368158 [-] UCSC Ensembl
Mir-199-P1-v1 2: 64374174-64374234 [-] UCSC Ensembl
Mir-199-P1-v2 2: 64374174-64374234 [-] UCSC Ensembl
Mir-199-P1-v3 2: 64374174-64374234 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UAGAAGCGUCCGGAGAUCCUGCUCCGUCGCCCCAGUGUUCAGACUACCUGUUCAGGACAAUGCUGUUGUACAGUAGUCUGCACAUUGGUUAGACUGGGCAAGGGAAAGCAGCGGCAUGGAC
Get precursor sequence
Structure
        10          20        30        40        50        60
UAGAAGCGUCCGGAGAU-  -|    C   GCC       U        C   UCAGGACA 
                  CC UGCUC GUC   CCAGUGU CAGACUAC UGU        A
                  GG ACGGG CAG   GGUUACA GUCUGAUG ACA        U
CAGGUACGGCGACGAAAG  A^    U   AUU       C        -   UGUUGUCG 
 .       110       100        90        80         70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
Br Ce He Ki Te
Star sequence

Mdo-Mir-199-P1-v3_5p*

mirBase accessionMIMAT0031065
Sequence
0- CCCAGUGUUCAGACUACCUGUU -22
Get sequence
Proposed targets TargetScanVert: mdo-miR-199b-2-5p
Mature sequence

Mdo-Mir-199-P1-v3_3p

mirBase accessionMIMAT0026678
Sequence
40- CAGUAGUCUGCACAUUGGUUA -61
Get sequence
Proposed targets TargetScanVert: mdo-miR-199b-3p