MirGeneDB 3.0
MirGeneDB ID

Mal-Mir-199-P3

Family name MIR-199 (all species)
Species Asian swamp eel (Monopterus albus)
MiRBase ID
Paralogues Mal-Mir-199-P1a-v1  Mal-Mir-199-P1b-as  Mal-Mir-199-P1b-v1  Mal-Mir-199-P2a-v1  Mal-Mir-199-P3-v1 
Orthologues Aca-Mir-199-P3-v1  Ami-Mir-199-P3-v1  Bta-Mir-199-P3-v1  Cfa-Mir-199-P3-v1  Cja-Mir-199-P3-v1  Cpi-Mir-199-P3-v1  Cpo-Mir-199-P3-v1  Dre-Mir-199-P3-v1  Eca-Mir-199-P3-v1  Ete-Mir-199-P3-v1  Gja-Mir-199-P3-v1  Gmo-Mir-199-P3-v1  Hsa-Mir-199-P3-v1  Laf-Mir-199-P3-v1  Lch-Mir-199-P3  Loc-Mir-199-P3-v1  Mdo-Mir-199-P3-v1  Mml-Mir-199-P3-v1  Mmr-Mir-199-P3-v1  Mmu-Mir-199-P3-v1  Mun-Mir-199-P3-v1  Neu-Mir-199-P3-v1  Ocu-Mir-199-P3-v1  Pab-Mir-199-P3-v1  Pbv-Mir-199-P3-v1  Pma-Mir-199-o3  Sha-Mir-199-P3-v1  Tni-Mir-199-P3-v1  Xla-Mir-199-P3a  Xla-Mir-199-P3b  Xtr-Mir-199-P3 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(GCA_001952655.1_M_albus_1.0_genomic)		 KV884793.1: 1445883-1445943 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-199-P3-v2)		 Mir-199-P3-v1 KV884793.1: 1445883-1445943 [-] UCSC Ensembl
Mir-199-P3-v2 KV884793.1: 1445883-1445943 [-] UCSC Ensembl
Mir-199-P3-v3 KV884793.1: 1445883-1445943 [-] UCSC Ensembl
Variant

Mal-Mir-199-P3-v2
Seed ACAGUAG
Precursor
(pre-Mir +30nt flank)		 
UCAGCAGAGCCCUCCUCACCCCCCCGCCUGCCCAGUGUUCAGACUACCUGUUCAUCAGGCUACAGCUGAACAGUAGUCUGCACAUUGGUUAGGCUGGGCUGGGACAAACACAGCUCCGGCC
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Structure
        10        20          30        40        50        60
UCAGCAGAGCCCUCCUCA   --|  C     C       U        C      UCAGG 
                  CCC  CCC GCCUG CCAGUGU CAGACUAC UGUUCA     C
                  GGG  GGG CGGAU GGUUACA GUCUGAUG ACAAGU     U
CCGGCCUCGACACAAACA   UC^  U     U       C        -      CGACA 
 .       110       100        90        80         70
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
- +
Fe Fe In Ma Ma
Star sequence

Mal-Mir-199-P3-v2_5p*
mirBase accessionNone
Sequence 
0- CCCAGUGUUCAGACUACCUGUUCA -24
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Mature sequence

Mal-Mir-199-P3-v2_3p
mirBase accessionNone
Sequence 
38- AACAGUAGUCUGCACAUUGGUUA -61
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Variant

Mal-Mir-199-P3-v1
Seed CAGUAGU
Precursor
(pre-Mir +30nt flank)		 
UCAGCAGAGCCCUCCUCACCCCCCCGCCUGCCCAGUGUUCAGACUACCUGUUCAUCAGGCUACAGCUGAACAGUAGUCUGCACAUUGGUUAGGCUGGGCUGGGACAAACACAGCUCCGGCC
Get precursor sequence
Structure
        10        20          30        40        50        60
UCAGCAGAGCCCUCCUCA   --|  C     C       U        C     AUCAGG 
                  CCC  CCC GCCUG CCAGUGU CAGACUAC UGUUC      C
                  GGG  GGG CGGAU GGUUACA GUCUGAUG ACAAG      U
CCGGCCUCGACACAAACA   UC^  U     U       C        -     UCGACA 
 .       110       100        90        80         70
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
- +
Fe Fe In Ma Ma
Star sequence

Mal-Mir-199-P3-v1_5p*
mirBase accessionNone
Sequence 
0- CCCAGUGUUCAGACUACCUGUUC -23
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Mature sequence

Mal-Mir-199-P3-v1_3p
mirBase accessionNone
Sequence 
39- ACAGUAGUCUGCACAUUGGUUA -61
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Variant

Mal-Mir-199-P3-v3
Seed AGUAGUC
Precursor
(pre-Mir +30nt flank)		 
UCAGCAGAGCCCUCCUCACCCCCCCGCCUGCCCAGUGUUCAGACUACCUGUUCAUCAGGCUACAGCUGAACAGUAGUCUGCACAUUGGUUAGGCUGGGCUGGGACAAACACAGCUCCGGCC
Get precursor sequence
Structure
        10        20          30        40        50        60
UCAGCAGAGCCCUCCUCA   --|  C     C       U        C    CAUCAGG 
                  CCC  CCC GCCUG CCAGUGU CAGACUAC UGUU       C
                  GGG  GGG CGGAU GGUUACA GUCUGAUG ACAA       U
CCGGCCUCGACACAAACA   UC^  U     U       C        -    GUCGACA 
 .       110       100        90        80         70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsNo
Tissue expression
- +
Fe Fe In Ma Ma
Star sequence

Mal-Mir-199-P3-v3_5p*
mirBase accessionNone
Sequence 
0- CCCAGUGUUCAGACUACCUGUU -22
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Mature sequence

Mal-Mir-199-P3-v3_3p
mirBase accessionNone
Sequence 
40- CAGUAGUCUGCACAUUGGUUA -61
Get sequence