MirGeneDB 3.0

MirGeneDB ID

Gpa-Mir-2-P4a

Family name MIR-2 (all species)
Species Tsetse fly (Glossina pallidipes)
MiRBase ID
Paralogues Gpa-Mir-2-P1-v1  Gpa-Mir-2-P2a  Gpa-Mir-2-P2b  Gpa-Mir-2-P3a  Gpa-Mir-2-P3b  Gpa-Mir-2-P4a-v1  Gpa-Mir-2-P4b-v1  Gpa-Mir-2-P5-v1  Gpa-Mir-2-P6  Gpa-Mir-2-P7  Gpa-Mir-2-P8  Gpa-Mir-2-P9 
Orthologues Aae-Mir-2-P4-v1  Aga-Mir-2-P4-v1  Bge-Mir-2-P4-v1  Cbr-Mir-2-o4  Cel-Mir-2-o4  Dan-Mir-2-P4a-v1  Dma-Mir-2-P4  Dme-Mir-2-P4a-v1  Dmo-Mir-2-P4a-v1  Dpu-Mir-2-P4  Dsi-Mir-2-P4a-v1  Dya-Mir-2-P4a-v1  Gsp-Mir-2  Hme-Mir-2-P4  Isc-Mir-2-P4  Ple-Mir-2  Tca-Mir-2-P4-v1 
Node of Origin (locus) Glossinidae + Drosophilidae
Node of Origin (family) Protostomia
Genome context
(GpalI1)
Scaffold18: 2343517-2343607 [-] Ensembl
Clustered miRNAs
(< 50kb from Mir-2-P4a-v2)
Mir-2-P4b-v1 Scaffold18: 2343308-2343367 [-] Ensembl
Mir-2-P4b-v2 Scaffold18: 2343308-2343367 [-] Ensembl
Mir-2-P4a-v1 Scaffold18: 2343517-2343607 [-] Ensembl
Mir-2-P4a-v2 Scaffold18: 2343517-2343607 [-] Ensembl
Mir-2-P3b Scaffold18: 2343730-2343802 [-] Ensembl
Variant

Gpa-Mir-2-P4a-v2

Seed CACAGCC
Precursor
(pre-Mir +30nt flank)
UAUAUGAAAAUUUUUCGGCACUUGUCCUAGCCUCACAAAGUGGCUGUGAAAUGUUGUGAAUUAUAUGAUUUUAGUUCUAAUUCAAUCUAAAAUUGCAUAUCACAGCCAGCUUUGAUGAGCUAGGACUUGUUGCACAGUAAUCAAUUAAGCA
Get precursor sequence
Structure
        10          20        30         40         50        60        70    
UAUAUGAAAAUUUUUCG-  -  UU       C    -     -|        AAUGUUGUGAAUUAUAUGAUUUUA 
                  GC AC  GUCCUAG CUCA CAAAG UGGCUGUGA                        G
                  CG UG  CAGGAUC GAGU GUUUC ACCGACACU                        U
ACGAAUUAACUAAUGACA  U  UU       -    A     G^        AUACGUUAAAAUCUAACUUAAUCU 
 .       140       130       120        110       100        90        80
Deep sequencing
Go to detailed chart
3' NTU No
MotifsUGUG in loop
Tissue expression
- +
To To To To To To To To To To To To To To To To To To To To To
Star sequence

Gpa-Mir-2-P4a-v2_5p*

mirBase accessionNone
Sequence
0- CCUCACAAAGUGGCUGUGAAA -21
Get sequence
Mature sequence

Gpa-Mir-2-P4a-v2_3p

mirBase accessionNone
Sequence
69- UCACAGCCAGCUUUGAUGAGCU -91
Get sequence
Variant

Gpa-Mir-2-P4a-v1

Seed AUCACAG
Precursor
(pre-Mir +30nt flank)
UAUAUGAAAAUUUUUCGGCACUUGUCCUAGCCUCACAAAGUGGCUGUGAAAUGUUGUGAAUUAUAUGAUUUUAGUUCUAAUUCAAUCUAAAAUUGCAUAUCACAGCCAGCUUUGAUGAGCUAGGACUUGUUGCACAGUAAUCAAUUAAGCA
Get precursor sequence
Structure
        10          20        30         40         50        60        70    
UAUAUGAAAAUUUUUCG-  -  UU       C    -     -|        A   UUGUGAAUUAUAUGAUUUUA 
                  GC AC  GUCCUAG CUCA CAAAG UGGCUGUGA AUG                    G
                  CG UG  CAGGAUC GAGU GUUUC ACCGACACU UAC                    U
ACGAAUUAACUAAUGACA  U  UU       -    A     G^        A   GUUAAAAUCUAACUUAAUCU 
 .       140       130       120        110       100        90        80
Deep sequencing
Go to detailed chart
3' NTU No
MotifsNo
Tissue expression
- +
To To To To To To To To To To To To To To To To To To To To To
Star sequence

Gpa-Mir-2-P4a-v1_5p*

mirBase accessionNone
Sequence
0- CCUCACAAAGUGGCUGUGAAAUG -23
Get sequence
Mature sequence

Gpa-Mir-2-P4a-v1_3p

mirBase accessionNone
Sequence
67- UAUCACAGCCAGCUUUGAUGAGCU -91
Get sequence