MirGeneDB 2.1

MirGeneDB ID

Cfa-Mir-29-P1d-v2

Family name MIR-29 (all species)
Seed UAGCACC
Species Dog (Canis familiaris)
MiRBase ID cfa-mir-29b-2
Paralogues Cfa-Mir-29-P1b-v1  Cfa-Mir-29-P1b-v2  Cfa-Mir-29-P1d-v1  Cfa-Mir-29-P2b  Cfa-Mir-29-P2d7  Cfa-Mir-29-P2d8 
Orthologues Aae-Mir-29-P1  Aca-Mir-29-P1d-v1  Aca-Mir-29-P1d-v2  Ami-Mir-29-P1d-v1  Ami-Mir-29-P1d-v2  Asu-Mir-29-P1  Bfl-Mir-29-P1  Bla-Mir-29-P1  Bta-Mir-29-P1d7-v1  Bta-Mir-29-P1d7-v2  Bta-Mir-29-P1d8-v1  Bta-Mir-29-P1d8-v2  Cbr-Mir-29-P1  Cel-Mir-29-P1  Cgi-Mir-29-P1  Cli-Mir-29-P1d-v1  Cli-Mir-29-P1d-v2  Cmi-Mir-29-P1d  Cpi-Mir-29-P1d-v1  Cpi-Mir-29-P1d-v2  Cpo-Mir-29-P1d-v1  Cpo-Mir-29-P1d-v2  Cte-Mir-29-P1  Dan-Mir-29-P1  Dme-Mir-29-P1  Dmo-Mir-29-P1  Dno-Mir-29-P1d-v1  Dno-Mir-29-P1d-v2  Dre-Mir-29-P1d1  Dre-Mir-29-P1d2  Dsi-Mir-29-P1  Dya-Mir-29-P1  Esc-Mir-29-P1  Ete-Mir-29-P1d-v1  Ete-Mir-29-P1d-v2  Gga-Mir-29-P1d-v1  Gga-Mir-29-P1d-v2  Gja-Mir-29-P1d-v1  Gja-Mir-29-P1d-v2  Gmo-Mir-29-P1d1  Gmo-Mir-29-P1d2  Hme-Mir-29-P1  Hsa-Mir-29-P1d-v1  Hsa-Mir-29-P1d-v2  Lch-Mir-29-P1d  Loc-Mir-29-P1d  Mal-Mir-29-P1d1  Mal-Mir-29-P1d2-v1  Mal-Mir-29-P1d2-v2  Mdo-Mir-29-P1d-v1  Mdo-Mir-29-P1d-v2  Mml-Mir-29-P1d-v1  Mml-Mir-29-P1d-v2  Mmu-Mir-29-P1d-v1  Mmu-Mir-29-P1d-v2  Mun-Mir-29-P1d-v1  Mun-Mir-29-P1d-v2  Npo-Mir-29-P1  Oan-Mir-29-P1d-v1  Oan-Mir-29-P1d-v2  Obi-Mir-29-P1  Ocu-Mir-29-P1d-v1  Ocu-Mir-29-P1d-v2  Ovu-Mir-29-P1  Pbv-Mir-29-P1d-v1  Pbv-Mir-29-P1d-v2  Pfl-Mir-29-P1  Pmi-Mir-29-P1  Rno-Mir-29-P1d5-v1  Rno-Mir-29-P1d5-v2  Rno-Mir-29-P1d6-v1  Rno-Mir-29-P1d6-v2  Sha-Mir-29-P1d-v1  Sha-Mir-29-P1d-v2  Sko-Mir-29-P1  Spt-Mir-29-P1d  Spu-Mir-29-P1  Sto-Mir-29-P1d  Tca-Mir-29-P1  Tgu-Mir-29-P1d-v1  Tgu-Mir-29-P1d-v2  Tni-Mir-29-P1d1  Tni-Mir-29-P1d2  Xbo-Mir-29-P1  Xla-Mir-29-P1d3  Xla-Mir-29-P1d4  Xtr-Mir-29-P1d 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Bilateria
Genome context
(canFam3_add)
chr7: 6651879-6651941 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-29-P1d-v2)
Mir-29-P2d7 chr7: 6651339-6651396 [-] UCSC Ensembl
Mir-29-P1d-v1 chr7: 6651878-6651942 [-] UCSC Ensembl
Mir-29-P1d-v2 chr7: 6651879-6651941 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CUCUUCAGUGAGAUCCUCUUCUUCUGGAAGCUGGUUUCACAUGGUGGCUUAGAUUUUUCCAUCUUUGUAUCUAGCACCAUUUGAAAUCAGUGUUUUAGGAGUAAGAAUUGCAGCGCAGCAGAG
Get precursor sequence
Structure
        10         20          30        40        50        60 
CUCUUCAGUGAGAUCCU-   -         -|         C      G  U    UUUUCC 
                  CUU CUUCUGGAA GCUGGUUUCA AUGGUG CU AGAU      A
                  GAA GAGGAUUUU UGACUAAAGU UACCAC GA UCUA      U
GAGACGACGCGACGUUAA   U         G^         U      -  -    UGUUUC 
 120       110       100        90        80          70
Deep sequencing
Go to detailed chart
CommentThere is a second Drosha cut +1 on both arms.
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
Bl Ce Co He Hy Ki Ki Li Lu Ov Sk Te Te
Star sequence

Cfa-Mir-29-P1d-v2_5p*

mirBase accessionNone
Sequence
0- CUGGUUUCACAUGGUGGCUUAGAU -24
Get sequence
Mature sequence

Cfa-Mir-29-P1d-v2_3p

mirBase accessionMIMAT0006625
Sequence
40- CUAGCACCAUUUGAAAUCAGUGU -63
Get sequence
Proposed targets TargetScanVert: cfa-miR-29b
miRDB: MIMAT0006625