MirGeneDB 3.0
MirGeneDB ID

Bko-Mir-242

Family name MIR-242 (all species)
Species Monogonont Rotifer 2 (Brachionus koreanus)
MiRBase ID
Paralogues
Orthologues Agr-Mir-242  Ava-Mir-242-P9  Ava-Mir-242-P10  Bfl-Mir-242  Bla-Mir-242-v1  Bpl-Mir-242  Cbr-Mir-242  Cel-Mir-242  Cte-Mir-242  Eba-Mir-242  Hru-Mir-242-P3a  Hru-Mir-242-P3b  Lan-Mir-242  Lgi-Mir-242-P1  Lgi-Mir-242-P2  Lhy-Mir-242  Mgi-Mir-242  Mom-Mir-242  Nag-Mir-242-P7  Nag-Mir-242-P8  Npo-Mir-242  Ofu-Mir-242  Pau-Mir-242  Pca-Mir-242  Pdu-Mir-242-P4a  Pdu-Mir-242-P4b  Pdu-Mir-242-P4c  Pdu-Mir-242-P4d  Pfl-Mir-242  Pmi-Mir-242  Pve-Mir-242-P5  Pve-Mir-242-P6  Rph-Mir-242  Sko-Mir-242  Snu-Mir-242  Spu-Mir-242  War-Mir-242 
Node of Origin (locus) Nephrozoa
Node of Origin (family) Nephrozoa
Genome context
(Brachionus_koreanusGCA_016987375.1_Bk_v0.5.4_genomic)		 PJRA01000172.1: 202468-202564 [-] Ensembl
Seed UGCGUAG
Precursor
(pre-Mir +30nt flank)		 
GAUGAAACGCUUGUCUUGUGAAUUUUGAUAUUGCGUAGGCGUUUUGCACUGAUUGAUAAUAUUAGGUUAAUCUAAGAGCUUUUAUUAGCUUUUAAAAGCCGUUCAGUGAAAAAGCCUAGACGCAAAAUUUAAAUUCAGAUUAUCAUCGGCCAAAAAU
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Structure
        10          20        30          40        50        60        70       
GAUGAAACGCUUGUCUUG--       U   A      --|   G    G      UUGAUAAUAUUAGGUUAAUCUAAG 
                    UGAAUUU GAU UUGCGU  AGGC UUUU CACUGA                        A
                    ACUUAAA UUA AACGCA  UCCG AAAA GUGACU                        G
UAAAAACCGGCUACUAUUAG       U   A      GA^   A    -      UGCCGAAAAUUUUCGAUUAUUUUC 
     150       140       130       120       110        100        90        80
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
- +
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Mature sequence

Bko-Mir-242_5p
mirBase accessionNone
Sequence 
0- UUGCGUAGGCGUUUUGCACUGA -22
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Star sequence

Bko-Mir-242_3p*
mirBase accessionNone
Sequence 
74- AGUGAAAAAGCCUAGACGCAAAA -97
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