MirGeneDB 2.1
MirGeneDB ID

Bpl-Mir-242

Family name MIR-242 (all species)
Seed UGCGUAG
Species Rotifer (Brachionus plicatilis)
MiRBase ID
Paralogues
Orthologues Bfl-Mir-242  Bla-Mir-242-v1  Bla-Mir-242-v2  Cbr-Mir-242  Cel-Mir-242  Cgi-Mir-242  Cte-Mir-242  Lan-Mir-242  Lgi-Mir-242-P1  Lgi-Mir-242-P2  Npo-Mir-242  Pfl-Mir-242  Pmi-Mir-242  Sko-Mir-242  Spu-Mir-242 
Node of Origin (locus) Bilateria
Node of Origin (family) Bilateria
Genome context
(Bpl_ASM1027981)		 QEOQ01000508.1: 5043559-5043655 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
UUUAGAAUUUUGCUCUUGUGAAUUUUGAUAUUGCGUAGGCGUUUUGCACUGAUUGAUUAUAAAAGUUUAGAACAAAGGCUUUUUGGGGCUUUUGUUUUACGUUCAGUGAAAAAGCCUAGACGCAAAAUUUAAAUUCGGAUUUUCAUCUGCGCGGCAU
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Structure
        10          20        30          40        50        60        70       
UUUAGAAUUUUGCUCUUG--       U   A      --|   G    G      UUGAUUAUAAAAGUUUAGAACAAA 
                    UGAAUUU GAU UUGCGU  AGGC UUUU CACUGA                        G
                    GCUUAAA UUA AACGCA  UCCG AAAA GUGACU                        G
UACGGCGCGUCUACUUUUAG       U   A      GA^   A    -      UGCAUUUUGUUUUCGGGGUUUUUC 
     150       140       130       120       110        100        90        80
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
-   +
To
Mature sequence

Bpl-Mir-242_5p
mirBase accessionNone
Sequence 
0- UUGCGUAGGCGUUUUGCACUGA -22
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Star sequence

Bpl-Mir-242_3p*
mirBase accessionNone
Sequence 
74- AGUGAAAAAGCCUAGACGCAAAA -97
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