MirGeneDB 3.0
MirGeneDB ID

Pdu-Mir-242-P4d

Family name MIR-242 (all species)
Species Dumerils clam worm (Platynereis dumerilii)
MiRBase ID
Paralogues Pdu-Mir-242-P4a  Pdu-Mir-242-P4b  Pdu-Mir-242-P4c 
Orthologues Agr-Mir-242  Bfl-Mir-242  Bko-Mir-242  Bpl-Mir-242  Cbr-Mir-242  Cel-Mir-242  Cte-Mir-242  Eba-Mir-242  Lan-Mir-242  Lhy-Mir-242  Mgi-Mir-242  Mom-Mir-242  Npo-Mir-242  Ofu-Mir-242  Pau-Mir-242  Pca-Mir-242  Pfl-Mir-242  Pmi-Mir-242  Rph-Mir-242  Sko-Mir-242  Snu-Mir-242  Spu-Mir-242  War-Mir-242 
Node of Origin (locus) P. dumerilii
Node of Origin (family) Nephrozoa
Genome context
(GCA_026936325.1_EMBL_pdum_1.0)		 JAPTHN010000007.1: 29836784-29836846 [+] Ensembl
Clustered miRNAs
(< 50kb from Mir-242-P4d)		 Mir-242-P4a JAPTHN010000007.1: 29826411-29826473 [+] Ensembl
Mir-242-P4b JAPTHN010000007.1: 29826777-29826839 [+] Ensembl
Mir-242-P4c JAPTHN010000007.1: 29827092-29827154 [+] Ensembl
Mir-242-P4d JAPTHN010000007.1: 29836784-29836846 [+] Ensembl
Seed UGCGUAG
Precursor
(pre-Mir +30nt flank)		 
UACGUUUUCUACAAGAAAUAUGUCUACGACUUGCGUAGGCGUUGUGCACAGAUUUGAUCACAGAGGUGGUCUGUGUAUUUUGCCUACGCAAAUUUGUAGGCGGUCAGAUUCAUCAAUCUUUUA
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Structure
        10        20         30         40        50        60 
UACGUUUUCUACAAGAAAUA-         C-|          UU         UUUGAUCA 
                     UGUCUACGA  UUGCGUAGGCG  GUGCACAGA        \
                     GCGGAUGUU  AACGCAUCCGU  UAUGUGUCU        C
AUUUUCUAACUACUUAGACUG         UA^          UU         GGUGGAGA 
 120       110       100        90        80        70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
24 24 24 24 24 36 36 36 36 36 48 48 48 48 48 6d 6d 6d 6d 72 72 72 72 72
Mature sequence

Pdu-Mir-242-P4d_5p
mirBase accessionNone
Sequence 
0- UUGCGUAGGCGUUGUGCACAGA -22
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Star sequence

Pdu-Mir-242-P4d_3p*
mirBase accessionNone
Sequence 
41- UGUGUAUUUUGCCUACGCAAAU -63
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