MirGeneDB 2.1

MirGeneDB ID

Npo-Mir-242

Family name MIR-242 (all species)
Seed UGCGUAG
Species Chambered Nautilus (Nautilus pompilius)
MiRBase ID
Paralogues
Orthologues Bfl-Mir-242  Bla-Mir-242-v1  Bla-Mir-242-v2  Bpl-Mir-242  Cbr-Mir-242  Cel-Mir-242  Cgi-Mir-242  Cte-Mir-242  Lan-Mir-242  Lgi-Mir-242-P1  Lgi-Mir-242-P2  Pfl-Mir-242  Pmi-Mir-242  Sko-Mir-242  Spu-Mir-242 
Node of Origin (locus) Bilateria
Node of Origin (family) Bilateria
Genome context
(GCA_018389105_NPO)
JACATO010000680.1: 783878-783934 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
ACUUAAACAUUUUUUUCUGCCUUCAAGUUGUUGCGUAGGCGUUUUGCGUAGGUUGGAUAUACUGCUAUGCAUUUCUCCUAGGCAUCAUCUUGUGGGUGUCAGCUUCCGAAUCUCAAC
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Structure
        10          20        30        40        50        
ACUUAAACAUUUUUUUCU--|   U    U  U   G    CGUUU       GUUGGA 
                    GCCU CAAG UG UGC UAGG     UGCGUAG      \
                    UGGG GUUC AC ACG AUCC     ACGUAUC      U
CAACUCUAAGCCUUCGACUG^   U    U  U   G    UCUUU       GUCAUA 
     110       100        90        80        70        60
Deep sequencing
3' NTU Unknown
MotifsCNNC at 3p(+17)
Mature sequence

Npo-Mir-242_5p (predicted)

mirBase accessionNone
Sequence
0- UUGCGUAGGCGUUUUGCGUAGG -22
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Star sequence

Npo-Mir-242_3p* (predicted)

mirBase accessionNone
Sequence
35- UAUGCAUUUCUCCUAGGCAUCA -57
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