MirGeneDB 3.0
MirGeneDB ID

Hru-Mir-242-P3a

Family name MIR-242 (all species)
Species Red Abalone (Haliotis rufescens)
MiRBase ID
Paralogues Hru-Mir-242-P3b 
Orthologues Agr-Mir-242  Bfl-Mir-242  Bko-Mir-242  Bpl-Mir-242  Cbr-Mir-242  Cel-Mir-242  Cte-Mir-242  Eba-Mir-242  Lan-Mir-242  Lhy-Mir-242  Mgi-Mir-242  Mom-Mir-242  Npo-Mir-242  Ofu-Mir-242  Pau-Mir-242  Pca-Mir-242  Pfl-Mir-242  Pmi-Mir-242  Rph-Mir-242  Sko-Mir-242  Snu-Mir-242  Spu-Mir-242  War-Mir-242 
Node of Origin (locus) H. rufescens
Node of Origin (family) Nephrozoa
Genome context
(GCA_023055435.1_xgHalRufe1.0.p_genomic_plus_traces)		 JALGQA010000016.1: 16932597-16932652 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-242-P3a)		 Mir-242-P3b JALGQA010000016.1: 16931077-16931132 [-] UCSC Ensembl
Mir-242-P3a JALGQA010000016.1: 16932597-16932652 [-] UCSC Ensembl
Seed UGCGUAG
Precursor
(pre-Mir +30nt flank)		 
AUCGUAACCUAAUACAUGCCACUGGUGUUGUUGCGUAGGCGUUGUGCACAGUUGUUGAAAAACCUGUGCAUCCCACCUAAGCGGCACUGCCAGUGGCCCAUCGACAAACACCCUGA
Get precursor sequence
Structure
        10          20        30        40        50       
AUCGUAACCUAAUACAU--|        GU      G    CGUU        UUGUU 
                   GCCACUGGU  UGUUGC UAGG    GUGCACAG     G
                   CGGUGACCG  ACGGCG AUCC    UACGUGUC     A
AGUCCCACAAACAGCUACC^        UC      A    ACCC        CAAAA 
    110       100        90        80        70        60
Deep sequencing
Go to detailed chart
3' NTU Unknown
MotifsUG at 5p(-14), CNNC at 3p(+17), UGUG in loop
Tissue expression
- +
To To
Mature sequence

Hru-Mir-242-P3a_5p
mirBase accessionNone
Sequence 
0- UUGCGUAGGCGUUGUGCACAGU -22
Get sequence
Star sequence

Hru-Mir-242-P3a_3p*
mirBase accessionNone
Sequence 
34- UGUGCAUCCCACCUAAGCGGCA -56
Get sequence