MirGeneDB ID | Cbr-Mir-242 |
Family name |
MIR-242 (all species) |
Seed |
UGCGUAG |
Species |
Roundworm (Caenorhabditis briggsae) |
MiRBase ID |
cbr-mir-242
|
Paralogues |
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Orthologues |
Bfl-Mir-242
Bla-Mir-242-v1
Bla-Mir-242-v2
Bpl-Mir-242
Cel-Mir-242
Cgi-Mir-242
Cte-Mir-242
Lan-Mir-242
Lgi-Mir-242-P1
Lgi-Mir-242-P2
Npo-Mir-242
Pfl-Mir-242
Pmi-Mir-242
Sko-Mir-242
Spu-Mir-242
|
Node of Origin (locus) |
Bilateria
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Node of Origin (family) |
Bilateria
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Genome context (CB4) |
II: 15031468-15031526 [-]
Ensembl
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Precursor (pre-Mir +30nt flank) |
UGGCAAUUCUUCUAAGCCAAAAAAAGAAUAUUGCGUAGGCCUUUGUUUCGAAAGACCCAAAAAUUGUUCGCAGCAAUCUCCUUCGCAAUAUUUUUUGGAAGAGGAAAUGUGCCACAAAU
Get precursor sequence
|
Structure | 10 20 30 40 50
UGGCAAUUCUUCUAAGCCAAAA-| U CCU U AGACCC
AAAGAAUAUUGCG AGG UUGUU CGAA A
UUUUUUAUAACGC UCC AACGA GCUU A
UAAACACCGUGUAAAGGAGAAGG^ U UCU C GUUAAA
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
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Motifs | No |
Tissue expression
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01 |
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10 |
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Cb |
Ea |
Ma |
Yo |
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Mature sequence |
Cbr-Mir-242_5p |
mirBase accession | MIMAT0004296 |
Sequence |
0- UUGCGUAGGCCUUUGUUUCGAA -22
Get sequence
|
Star sequence |
Cbr-Mir-242_3p* |
mirBase accession | None |
Sequence |
37- UCGCAGCAAUCUCCUUCGCAAU -59
Get sequence
|