MirGeneDB 3.0
MirGeneDB ID

Ava-Mir-242-P9

Family name MIR-242 (all species)
Species Bdelloid rotifer (Adineta vaga)
MiRBase ID
Paralogues Ava-Mir-242-P10 
Orthologues Agr-Mir-242  Bfl-Mir-242  Bko-Mir-242  Bpl-Mir-242  Cbr-Mir-242  Cel-Mir-242  Cte-Mir-242  Eba-Mir-242  Lan-Mir-242  Lhy-Mir-242  Mgi-Mir-242  Mom-Mir-242  Npo-Mir-242  Ofu-Mir-242  Pau-Mir-242  Pca-Mir-242  Pfl-Mir-242  Pmi-Mir-242  Rph-Mir-242  Sko-Mir-242  Snu-Mir-242  Spu-Mir-242  War-Mir-242 
Node of Origin (locus) A. vaga
Node of Origin (family) Nephrozoa
Genome context
(GCA_021613535.1_ASM2161353v1_AVA)		 CP075497.1: 8451995-8452069 [-] Ensembl
Clustered miRNAs
(< 50kb from Mir-242-P9)		 Mir-278 CP075497.1: 8438396-8438464 [-] Ensembl
Mir-242-P9 CP075497.1: 8451995-8452069 [-] Ensembl
Seed UGCGUAG
Precursor
(pre-Mir +30nt flank)		 
CCAUAUGAAAUAUACCCGUUAUGUUGUAUUUUGCGUAGGCGUUCUUGCAAGGAUAGGUACGCUCUCUUGUGUAAGAAAUUUCCUUGUAUAACGCACUAUGCAAGUACCACUCGGAUAAGUCAUCGUUCAAGACGU
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Structure
        10          20         30         40        50        60       
CCAUAUGAAAUAUACCC--   AU-| U      U      -     CU        UAGGUACGCUCUC 
                   GUU   GU GUAUUU GCGUAG GCGUU  UGCAAGGA             \
                   UAG   CA CAUGAA CGUAUC CGCAA  AUGUUCCU             U
UGCAGAACUUGCUACUGAA   GCU^ C      -      A     U-        UUAAAGAAUGUGU 
   130       120       110        100        90         80        70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
To To
Mature sequence

Ava-Mir-242-P9_5p
mirBase accessionNone
Sequence 
0- UUGCGUAGGCGUUCUUGCAAGGA -23
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Star sequence

Ava-Mir-242-P9_3p*
mirBase accessionNone
Sequence 
52- CUUGUAUAACGCACUAUGCAAGU -75
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