MirGeneDB ID | Xla-Mir-489-P1-v2 |
Family name |
MIR-489 (all species) |
Seed |
GACAUCA |
Species |
African clawed frog (Xenopus laevis) |
MiRBase ID |
|
Paralogues |
Xla-Mir-489-P1-v1
Xla-Mir-489-P2-v1
Xla-Mir-489-P2-v2
|
Orthologues |
Cfa-Mir-489
Dno-Mir-489
Gja-Mir-489
Lch-Mir-489
Mmu-Mir-489
Mun-Mir-489
Ocu-Mir-489
Pbv-Mir-489
Rno-Mir-489
Sha-Mir-489
Spt-Mir-489
|
Node of Origin (locus) |
X. laevis
|
Node of Origin (family) |
Osteichthyes
|
Genome context (GCF_001663975.1_XLA_v2) |
NC_030734.1: 29791979-29792040 [-]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
UGCGCCGAGACAAUAAUCGUGGUGGCUUAGUGGUCGUAUGUAUGACGUCAUUUGCUUGAUUAUUUAGGAGUGACAUCAUAUGUACGGCUGCUAAACUGCUGCAUGAUACGUCUGUCAUGGAA
Get precursor sequence
|
Structure | 10 20 30 40 50 60
UGCGCCGAGACAAUAAUC--|UG UG C UG C UGCUUGA
G G G UUAG GUCGUAUGUAUGA GUCAUU U
C C C AAUC CGGCAUGUAUACU CAGUGA U
AAGGUACUGUCUGCAUAGUA^GU GU A GU A GGAUUUA
120 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
|
Star sequence |
Xla-Mir-489-P1-v2_5p* |
mirBase accession | None |
Sequence |
0- UGGUCGUAUGUAUGACGUCAUU -22
Get sequence
|
Mature sequence |
Xla-Mir-489-P1-v2_3p |
mirBase accession | None |
Sequence |
40- UGACAUCAUAUGUACGGCUGCU -62
Get sequence
|