Mir-154-P13

MirGeneDB ID

Rno-Mir-154-P13

Family name

MIR-154 (all species)

Seed

AGUAGAC

Species

Norway rat (Rattus norvegicus)

MiRBase ID

rno-mir-411

Paralogues

Rno-Mir-154-P1 Rno-Mir-154-P2-v1 Rno-Mir-154-P2-v2 Rno-Mir-154-P3a-v1 Rno-Mir-154-P3a-v2 Rno-Mir-154-P4-o1 Rno-Mir-154-P5 Rno-Mir-154-P6 Rno-Mir-154-P7 Rno-Mir-154-P8 Rno-Mir-154-P9 Rno-Mir-154-P10 Rno-Mir-154-P12 Rno-Mir-154-P14 Rno-Mir-154-P15 Rno-Mir-154-P17 Rno-Mir-154-P18 Rno-Mir-154-P19 Rno-Mir-154-P20-v1 Rno-Mir-154-P20-v2 Rno-Mir-154-P21 Rno-Mir-154-P22 Rno-Mir-154-P26 Rno-Mir-154-P29-v1 Rno-Mir-154-P29-v2 Rno-Mir-154-P30 Rno-Mir-154-P34 Rno-Mir-154-P36

Orthologues

Bta-Mir-154-P13 Cfa-Mir-154-P13 Cpo-Mir-154-P13 Dno-Mir-154-P13 Ete-Mir-154-P13 Hsa-Mir-154-P13-v1 Hsa-Mir-154-P13-v2 Mml-Mir-154-P13 Mmu-Mir-154-P13 Ocu-Mir-154-P13

Node of Origin (locus)

Eutheria

Node of Origin (family)

Eutheria

Genome context
(rn6)

chr6: 133858859-133858914 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-154-P13)

Mir-154-P7 chr6: 133857715-133857772 [+] UCSC Ensembl
Mir-154-P13 chr6: 133858859-133858914 [+] UCSC Ensembl
Mir-154-P2-v1 chr6: 133859329-133859383 [+] UCSC Ensembl
Mir-154-P2-v2 chr6: 133859330-133859382 [+] UCSC Ensembl
Mir-154-P8 chr6: 133860500-133860556 [+] UCSC Ensembl
Mir-154-P3a-v2 chr6: 133861214-133861269 [+] UCSC Ensembl
Mir-154-P3a-v1 chr6: 133861214-133861269 [+] UCSC Ensembl
Mir-154-P26 chr6: 133861509-133861566 [+] UCSC Ensembl
Mir-154-P4-o1 chr6: 133862190-133862249 [+] UCSC Ensembl
Mir-154-P18 chr6: 133864385-133864440 [+] UCSC Ensembl
Mir-154-P29-v1 chr6: 133864729-133864785 [+] UCSC Ensembl
Mir-154-P29-v2 chr6: 133864730-133864784 [+] UCSC Ensembl
Mir-666 chr6: 133866541-133866601 [+] UCSC Ensembl
Mir-154-P22 chr6: 133866672-133866729 [+] UCSC Ensembl
Mir-154-P19 chr6: 133868298-133868357 [+] UCSC Ensembl
Mir-667 chr6: 133869584-133869647 [+] UCSC Ensembl
Mir-376-P4 chr6: 133872453-133872510 [+] UCSC Ensembl
Mir-376-P2 chr6: 133873110-133873167 [+] UCSC Ensembl
Mir-376-P1 chr6: 133873618-133873675 [+] UCSC Ensembl
Mir-154-P34 chr6: 133874161-133874223 [+] UCSC Ensembl
Mir-154-P9 chr6: 133876615-133876677 [+] UCSC Ensembl
Mir-154-P17 chr6: 133877137-133877194 [+] UCSC Ensembl
Mir-154-P21 chr6: 133877840-133877901 [+] UCSC Ensembl
Mir-544 chr6: 133879179-133879235 [+] UCSC Ensembl
Mir-154-P10 chr6: 133884190-133884247 [+] UCSC Ensembl
Mir-134 chr6: 133884554-133884614 [+] UCSC Ensembl
Mir-154-P15 chr6: 133885310-133885368 [+] UCSC Ensembl
Mir-154-P1 chr6: 133888600-133888657 [+] UCSC Ensembl
Mir-154-P20-v2 chr6: 133889296-133889351 [+] UCSC Ensembl
Mir-154-P20-v1 chr6: 133889297-133889350 [+] UCSC Ensembl
Mir-154-P6 chr6: 133890697-133890756 [+] UCSC Ensembl
Mir-541 chr6: 133892668-133892733 [+] UCSC Ensembl
Mir-154-P36 chr6: 133893432-133893485 [+] UCSC Ensembl
Mir-154-P14 chr6: 133893579-133893634 [+] UCSC Ensembl
Mir-154-P5 chr6: 133893706-133893761 [+] UCSC Ensembl
Mir-154-P12 chr6: 133894007-133894062 [+] UCSC Ensembl
Mir-3072 chr6: 133898823-133898879 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

CUCGGCGUCUCUGUGUGGUACUUGGAGAGAUAGUAGACCGUAUAGCGUACGCUUUAUCUGUGACGUAUGUAACACGGUCCACUAACCCUCAGUAUCAAAUCCAUCCCCGAGGCCCC

Get precursor sequence

Structure

        10            20        30        40        50       
CUCGGCGUCUCUGUGUG----|    UG   AGA    A      AUA       CUUUA 
                     GUACU  GAG   UAGU GACCGU   GCGUACG     U
                     UAUGA  CUC   AUCA CUGGCA   UGUAUGC     C
CCCCGGAGCCCCUACCUAAAC^    --   CCA    C      CAA       AGUGU 
    110       100          90        80        70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Ad	Ad	Br	Br	Br	Ce	Ce	Ce	Ce	Co	Co	Co	Co	Dr	Dr	Du	Du	Du	Du	He	He	Hi	Hi	Il	Il	Je	Je	Ki	Ki	Ki	Ki	Li	Li	Li	Li	Me	Me	Mu	Mu	Mu	Mu	Mu	Mu	Mu	Mu	Ov	Pa	Pa	St	St	St	Te	Ut	Wh	Br	Fa	He	Ki	La	Li	Li	Lu	Mu	Pa	Sk	Sm	Sp	St	Te	Th

Mature sequence

Rno-Mir-154-P13_5p

mirBase accession

MIMAT0005312

Sequence

0- UAGUAGACCGUAUAGCGUACG -21

Get sequence

Proposed targets

microrna.org: MIMAT0005312
TargetScanVert: rno-miR-411-5p
miRDB: MIMAT0005312

Star sequence

Rno-Mir-154-P13_3p*

mirBase accession

MIMAT0017304

Sequence

35- UAUGUAACACGGUCCACUAAC -56

Get sequence

Proposed targets

TargetScanVert: rno-miR-411-3p
miRDB: MIMAT0017304