Mir-154-P20-v1

MirGeneDB ID

Rno-Mir-154-P20-v1

Family name

MIR-154 (all species)

Seed

GAGUAUU

Species

Norway rat (Rattus norvegicus)

MiRBase ID

rno-mir-496

Paralogues

Rno-Mir-154-P1 Rno-Mir-154-P2-v1 Rno-Mir-154-P2-v2 Rno-Mir-154-P3a-v1 Rno-Mir-154-P3a-v2 Rno-Mir-154-P4-o1 Rno-Mir-154-P5 Rno-Mir-154-P6 Rno-Mir-154-P7 Rno-Mir-154-P8 Rno-Mir-154-P9 Rno-Mir-154-P10 Rno-Mir-154-P12 Rno-Mir-154-P13 Rno-Mir-154-P14 Rno-Mir-154-P15 Rno-Mir-154-P17 Rno-Mir-154-P18 Rno-Mir-154-P19 Rno-Mir-154-P20-v2 Rno-Mir-154-P21 Rno-Mir-154-P22 Rno-Mir-154-P26 Rno-Mir-154-P29-v1 Rno-Mir-154-P29-v2 Rno-Mir-154-P30 Rno-Mir-154-P34 Rno-Mir-154-P36

Orthologues

Bta-Mir-154-P20 Cfa-Mir-154-P20 Cpo-Mir-154-P20-v1 Cpo-Mir-154-P20-v2 Dno-Mir-154-P20-v1 Dno-Mir-154-P20-v2 Ete-Mir-154-P20-v1 Ete-Mir-154-P20-v2 Hsa-Mir-154-P20-v1 Hsa-Mir-154-P20-v2 Mml-Mir-154-P20-v1 Mml-Mir-154-P20-v2 Mmu-Mir-154-P20-v1 Mmu-Mir-154-P20-v2 Ocu-Mir-154-P20-v1 Ocu-Mir-154-P20-v2

Node of Origin (locus)

Eutheria

Node of Origin (family)

Eutheria

Genome context
(rn6)

chr6: 133889297-133889350 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-154-P20-v1)

Mir-154-P7 chr6: 133857715-133857772 [+] UCSC Ensembl
Mir-154-P13 chr6: 133858859-133858914 [+] UCSC Ensembl
Mir-154-P2-v1 chr6: 133859329-133859383 [+] UCSC Ensembl
Mir-154-P2-v2 chr6: 133859330-133859382 [+] UCSC Ensembl
Mir-154-P8 chr6: 133860500-133860556 [+] UCSC Ensembl
Mir-154-P3a-v2 chr6: 133861214-133861269 [+] UCSC Ensembl
Mir-154-P3a-v1 chr6: 133861214-133861269 [+] UCSC Ensembl
Mir-154-P26 chr6: 133861509-133861566 [+] UCSC Ensembl
Mir-154-P4-o1 chr6: 133862190-133862249 [+] UCSC Ensembl
Mir-154-P18 chr6: 133864385-133864440 [+] UCSC Ensembl
Mir-154-P29-v1 chr6: 133864729-133864785 [+] UCSC Ensembl
Mir-154-P29-v2 chr6: 133864730-133864784 [+] UCSC Ensembl
Mir-666 chr6: 133866541-133866601 [+] UCSC Ensembl
Mir-154-P22 chr6: 133866672-133866729 [+] UCSC Ensembl
Mir-154-P19 chr6: 133868298-133868357 [+] UCSC Ensembl
Mir-667 chr6: 133869584-133869647 [+] UCSC Ensembl
Mir-376-P4 chr6: 133872453-133872510 [+] UCSC Ensembl
Mir-376-P2 chr6: 133873110-133873167 [+] UCSC Ensembl
Mir-376-P1 chr6: 133873618-133873675 [+] UCSC Ensembl
Mir-154-P34 chr6: 133874161-133874223 [+] UCSC Ensembl
Mir-154-P9 chr6: 133876615-133876677 [+] UCSC Ensembl
Mir-154-P17 chr6: 133877137-133877194 [+] UCSC Ensembl
Mir-154-P21 chr6: 133877840-133877901 [+] UCSC Ensembl
Mir-544 chr6: 133879179-133879235 [+] UCSC Ensembl
Mir-154-P10 chr6: 133884190-133884247 [+] UCSC Ensembl
Mir-134 chr6: 133884554-133884614 [+] UCSC Ensembl
Mir-154-P15 chr6: 133885310-133885368 [+] UCSC Ensembl
Mir-154-P1 chr6: 133888600-133888657 [+] UCSC Ensembl
Mir-154-P20-v2 chr6: 133889296-133889351 [+] UCSC Ensembl
Mir-154-P20-v1 chr6: 133889297-133889350 [+] UCSC Ensembl
Mir-154-P6 chr6: 133890697-133890756 [+] UCSC Ensembl
Mir-541 chr6: 133892668-133892733 [+] UCSC Ensembl
Mir-154-P36 chr6: 133893432-133893485 [+] UCSC Ensembl
Mir-154-P14 chr6: 133893579-133893634 [+] UCSC Ensembl
Mir-154-P5 chr6: 133893706-133893761 [+] UCSC Ensembl
Mir-154-P12 chr6: 133894007-133894062 [+] UCSC Ensembl
Mir-3072 chr6: 133898823-133898879 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

CAAGCUCUCGAAAUCAAGUGUUCGAAUGGAGGUUGUCCAUGGUGUGUUCAUUUUAUUUAUGAUGAGUAUUACAUGGCCAAUCUCCUUUCGGCACUAAAAUCUUCCUGGGAGAGC

Get precursor sequence

Structure

        10           20        30        40        50      
CAAGCUCUCGAAAUCAA---|   U    U        U     GU         UUA 
                    GUGU CGAA GGAGGUUG CCAUG  GUGUUCAUU   U
                    CACG GCUU CCUCUAAC GGUAC  UAUGAGUAG   U
CGAGAGGGUCCUUCUAAAAU^   -    U        C     AU         UAU 
  110       100         90        80        70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Ad	Ad	Br	Br	Br	Ce	Ce	Ce	Ce	Co	Co	Co	Co	Dr	Dr	Du	Du	Du	Du	He	He	Hi	Hi	Il	Il	Je	Je	Ki	Ki	Ki	Ki	Li	Li	Li	Li	Me	Me	Mu	Mu	Mu	Mu	Mu	Mu	Mu	Mu	Ov	Pa	Pa	St	St	St	Te	Ut	Wh	Br	Fa	He	Ki	La	Li	Li	Lu	Mu	Pa	Sk	Sm	Sp	St	Te	Th

Star sequence

Rno-Mir-154-P20-v1_5p*

mirBase accession

MIMAT0017372

Sequence

0- GGUUGUCCAUGGUGUGUUCAUU -22

Get sequence

Proposed targets

TargetScanVert: rno-miR-496-5p
miRDB: MIMAT0017372

Mature sequence

Rno-Mir-154-P20-v1_3p

mirBase accession

MIMAT0012860

Sequence

32- UGAGUAUUACAUGGCCAAUCUC -54

Get sequence

Proposed targets

microrna.org: MIMAT0012860
TargetScanVert: rno-miR-496-3p
miRDB: MIMAT0012860