Mir-154-P18

MirGeneDB ID

Rno-Mir-154-P18

Family name

MIR-154 (all species)

Seed

GAAACAU

Species

Norway rat (Rattus norvegicus)

MiRBase ID

rno-mir-494

Paralogues

Rno-Mir-154-P1 Rno-Mir-154-P2-v1 Rno-Mir-154-P2-v2 Rno-Mir-154-P3a-v1 Rno-Mir-154-P3a-v2 Rno-Mir-154-P4-o1 Rno-Mir-154-P5 Rno-Mir-154-P6 Rno-Mir-154-P7 Rno-Mir-154-P8 Rno-Mir-154-P9 Rno-Mir-154-P10 Rno-Mir-154-P12 Rno-Mir-154-P13 Rno-Mir-154-P14 Rno-Mir-154-P15 Rno-Mir-154-P17 Rno-Mir-154-P19 Rno-Mir-154-P20-v1 Rno-Mir-154-P20-v2 Rno-Mir-154-P21 Rno-Mir-154-P22 Rno-Mir-154-P26 Rno-Mir-154-P29-v1 Rno-Mir-154-P29-v2 Rno-Mir-154-P30 Rno-Mir-154-P34 Rno-Mir-154-P36

Orthologues

Bta-Mir-154-P18 Cfa-Mir-154-P18 Cpo-Mir-154-P18 Dno-Mir-154-P18 Ete-Mir-154-P18 Hsa-Mir-154-P18 Mml-Mir-154-P18 Mmu-Mir-154-P18

Node of Origin (locus)

Eutheria

Node of Origin (family)

Eutheria

Genome context
(rn6)

chr6: 133864385-133864440 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-154-P18)

Mir-154-P7 chr6: 133857715-133857772 [+] UCSC Ensembl
Mir-154-P13 chr6: 133858859-133858914 [+] UCSC Ensembl
Mir-154-P2-v1 chr6: 133859329-133859383 [+] UCSC Ensembl
Mir-154-P2-v2 chr6: 133859330-133859382 [+] UCSC Ensembl
Mir-154-P8 chr6: 133860500-133860556 [+] UCSC Ensembl
Mir-154-P3a-v2 chr6: 133861214-133861269 [+] UCSC Ensembl
Mir-154-P3a-v1 chr6: 133861214-133861269 [+] UCSC Ensembl
Mir-154-P26 chr6: 133861509-133861566 [+] UCSC Ensembl
Mir-154-P4-o1 chr6: 133862190-133862249 [+] UCSC Ensembl
Mir-154-P18 chr6: 133864385-133864440 [+] UCSC Ensembl
Mir-154-P29-v1 chr6: 133864729-133864785 [+] UCSC Ensembl
Mir-154-P29-v2 chr6: 133864730-133864784 [+] UCSC Ensembl
Mir-666 chr6: 133866541-133866601 [+] UCSC Ensembl
Mir-154-P22 chr6: 133866672-133866729 [+] UCSC Ensembl
Mir-154-P19 chr6: 133868298-133868357 [+] UCSC Ensembl
Mir-667 chr6: 133869584-133869647 [+] UCSC Ensembl
Mir-376-P4 chr6: 133872453-133872510 [+] UCSC Ensembl
Mir-376-P2 chr6: 133873110-133873167 [+] UCSC Ensembl
Mir-376-P1 chr6: 133873618-133873675 [+] UCSC Ensembl
Mir-154-P34 chr6: 133874161-133874223 [+] UCSC Ensembl
Mir-154-P9 chr6: 133876615-133876677 [+] UCSC Ensembl
Mir-154-P17 chr6: 133877137-133877194 [+] UCSC Ensembl
Mir-154-P21 chr6: 133877840-133877901 [+] UCSC Ensembl
Mir-544 chr6: 133879179-133879235 [+] UCSC Ensembl
Mir-154-P10 chr6: 133884190-133884247 [+] UCSC Ensembl
Mir-134 chr6: 133884554-133884614 [+] UCSC Ensembl
Mir-154-P15 chr6: 133885310-133885368 [+] UCSC Ensembl
Mir-154-P1 chr6: 133888600-133888657 [+] UCSC Ensembl
Mir-154-P20-v2 chr6: 133889296-133889351 [+] UCSC Ensembl
Mir-154-P20-v1 chr6: 133889297-133889350 [+] UCSC Ensembl
Mir-154-P6 chr6: 133890697-133890756 [+] UCSC Ensembl
Mir-541 chr6: 133892668-133892733 [+] UCSC Ensembl
Mir-154-P36 chr6: 133893432-133893485 [+] UCSC Ensembl
Mir-154-P14 chr6: 133893579-133893634 [+] UCSC Ensembl
Mir-154-P5 chr6: 133893706-133893761 [+] UCSC Ensembl
Mir-154-P12 chr6: 133894007-133894062 [+] UCSC Ensembl
Mir-3072 chr6: 133898823-133898879 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

CUGACCAGUGCUAAUUGAUACUUGAAGGAGAGGUUGUCCGUGUUGUCUUCUCUUUAUUUAUGAUGAAACAUACACGGGAAACCUCUUUUUUAGUAUCAAAUCCCACCUGGUAGGCA

Get precursor sequence

Structure

        10           20        30        40         50        
CUGACCAGUGCUAAUUG---|    U            GU      -   C   -  UUUA 
                    AUACU GAAGGAGAGGUU  CCGUGU UGU UUC UC    \
                    UAUGA UUUUUUCUCCAA  GGCACA ACA AAG AG    U
ACGGAUGGUCCACCCUAAAC^    -            AG      U   -   U  UAUU 
    110       100         90        80        70         60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Ad	Ad	Br	Br	Br	Ce	Ce	Ce	Ce	Co	Co	Co	Co	Dr	Dr	Du	Du	Du	Du	He	He	Hi	Hi	Il	Il	Je	Je	Ki	Ki	Ki	Ki	Li	Li	Li	Li	Me	Me	Mu	Mu	Mu	Mu	Mu	Mu	Mu	Mu	Ov	Pa	Pa	St	St	St	Te	Ut	Wh	Br	Fa	He	Ki	La	Li	Li	Lu	Mu	Pa	Sk	Sm	Sp	St	Te	Th

Star sequence

Rno-Mir-154-P18_5p*

mirBase accession

MIMAT0017218

Sequence

0- AGGUUGUCCGUGUUGUCUUCUCU -23

Get sequence

Proposed targets

TargetScanVert: rno-miR-494-5p
miRDB: MIMAT0017218

Mature sequence

Rno-Mir-154-P18_3p

mirBase accession

MIMAT0003193

Sequence

33- UGAAACAUACACGGGAAACCUCU -56

Get sequence

Proposed targets

microrna.org: MIMAT0003193
TargetScanVert: rno-miR-494-3p
miRDB: MIMAT0003193