Mir-154-P6a-v2

MirGeneDB ID

Rno-Mir-154-P6a

Family name

MIR-154 (all species)

Species

Norway rat (Rattus norvegicus)

MiRBase ID

rno-mir-323

Paralogues

Rno-Mir-154-P1 Rno-Mir-154-P2-v1 Rno-Mir-154-P3-v1 Rno-Mir-154-P4 Rno-Mir-154-P6a-v1 Rno-Mir-154-P7 Rno-Mir-154-P8-o1 Rno-Mir-154-P9 Rno-Mir-154-P10 Rno-Mir-154-P11 Rno-Mir-154-P12 Rno-Mir-154-P15 Rno-Mir-154-P17 Rno-Mir-154-P18 Rno-Mir-154-P19 Rno-Mir-154-P24 Rno-Mir-154-P25 Rno-Mir-154-P26 Rno-Mir-154-P28-v1 Rno-Mir-154-P29 Rno-Mir-154-P30 Rno-Mir-154-P31 Rno-Mir-154-P32 Rno-Mir-154-P33

Orthologues

Bta-Mir-154-P6a-v1 Cfa-Mir-154-P6a-v1 Cja-Mir-154-P6a Cpo-Mir-154-P6a-v1 Dno-Mir-154-P6a-v1 Eca-Mir-154-P6a-v1 Ete-Mir-154-P6a-v1 Hsa-Mir-154-P6a-v1 Laf-Mir-154-P6a Mml-Mir-154-P6a-v1 Mmr-Mir-154-P6a-v1 Mmu-Mir-154-P6a-v1 Ocu-Mir-154-P6a-v1 Pab-Mir-154-P6a-v1

Node of Origin (locus)

Eutheria

Node of Origin (family)

Eutheria

Genome context
(rn6)

chr6: 133861214-133861269 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-154-P6a-v2)

Mir-154-P1 chr6: 133857715-133857772 [+] UCSC Ensembl
Mir-154-P2-v2 chr6: 133858858-133858915 [+] UCSC Ensembl
Mir-154-P2-v1 chr6: 133858859-133858914 [+] UCSC Ensembl
Mir-154-P3-v1 chr6: 133859329-133859383 [+] UCSC Ensembl
Mir-154-P3-v2 chr6: 133859330-133859382 [+] UCSC Ensembl
Mir-154-P4 chr6: 133860500-133860556 [+] UCSC Ensembl
Mir-154-P6a-v1 chr6: 133861214-133861269 [+] UCSC Ensembl
Mir-154-P6a-v2 chr6: 133861214-133861269 [+] UCSC Ensembl
Mir-154-P7 chr6: 133861509-133861566 [+] UCSC Ensembl
Mir-154-P8-o1 chr6: 133862190-133862249 [+] UCSC Ensembl
Mir-154-P9 chr6: 133864385-133864440 [+] UCSC Ensembl
Mir-154-P10 chr6: 133864729-133864785 [+] UCSC Ensembl
Mir-666 chr6: 133866541-133866601 [+] UCSC Ensembl
Mir-154-P11 chr6: 133866672-133866729 [+] UCSC Ensembl
Mir-154-P12 chr6: 133868298-133868357 [+] UCSC Ensembl
Mir-667 chr6: 133869584-133869647 [+] UCSC Ensembl
Mir-376-P2 chr6: 133872453-133872510 [+] UCSC Ensembl
Mir-376-P4 chr6: 133873110-133873167 [+] UCSC Ensembl
Mir-376-P5 chr6: 133873618-133873675 [+] UCSC Ensembl
Mir-154-P15 chr6: 133874161-133874223 [+] UCSC Ensembl
Mir-154-P17 chr6: 133876615-133876677 [+] UCSC Ensembl
Mir-154-P18 chr6: 133877137-133877194 [+] UCSC Ensembl
Mir-154-P19 chr6: 133877840-133877901 [+] UCSC Ensembl
Mir-544 chr6: 133879179-133879235 [+] UCSC Ensembl
Mir-154-P24 chr6: 133884190-133884247 [+] UCSC Ensembl
Mir-134 chr6: 133884554-133884614 [+] UCSC Ensembl
Mir-154-P25 chr6: 133885310-133885368 [+] UCSC Ensembl
Mir-154-P26 chr6: 133888600-133888657 [+] UCSC Ensembl
Mir-154-P28-v2 chr6: 133889296-133889351 [+] UCSC Ensembl
Mir-154-P28-v1 chr6: 133889297-133889350 [+] UCSC Ensembl
Mir-154-P29 chr6: 133890697-133890756 [+] UCSC Ensembl
Mir-541 chr6: 133892668-133892733 [+] UCSC Ensembl
Mir-154-P30 chr6: 133893432-133893485 [+] UCSC Ensembl
Mir-154-P31 chr6: 133893579-133893634 [+] UCSC Ensembl
Mir-154-P32 chr6: 133893706-133893761 [+] UCSC Ensembl
Mir-154-P33 chr6: 133894007-133894062 [+] UCSC Ensembl
Mir-3072 chr6: 133898823-133898879 [+] UCSC Ensembl

Variant

Rno-Mir-154-P6a-v2

Seed

CACAUUA

Precursor
(pre-Mir +30nt flank)

CCCUACUGCUGCUGCUUGGUACUUGGAGAGAGGUGGUCCGUGGCGCGUUCGCUUCAUUUAUGGCGCACAUUACACGGUCGACCUCUUUGCGGUAUCUAAUCCCGCCUUGCGAGCUU

Get precursor sequence

Structure

        10           20        30         40        50       
CCCUACUGCUGCUGCUU---|     U G        -  U     GCGC  U   UUCA 
                    GGUACU G AGAGAGGU GG CCGUG    GU CGC    U
                    CUAUGG C UUUCUCCA CU GGCAC    CA GCG    U
UUCGAGCGUUCCGCCCUAAU^     - G        G  -     AUUA  C   GUAU 
    110       100         90        80         70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17)

Tissue expression

Dr	Dr	Ad	Bi	Bi	Bi	Bi	Br	Br	Br	Br	Ce	Ce	Ce	Ce	Co	Co	Co	Co	Du	Du	Du	Du	Fa	He	He	He	Hi	Hi	Il	Il	Je	Je	Ki	Ki	Ki	Ki	Ki	La	Li	Li	Li	Li	Li	Li	Lu	Me	Me	Mu	Ov	Pa	Pa	Pa	Sk	Sm	So	So	So	So	Sp	St	St	St	St	Te	Te	Th	Ut	Wh

Star sequence

Rno-Mir-154-P6a-v2_5p*

mirBase accession

MIMAT0004637

Sequence

0- AGGUGGUCCGUGGCGCGUUCGC -22

Get sequence

Proposed targets

microrna.org: MIMAT0004637
TargetScanVert: rno-miR-323-5p
miRDB: MIMAT0004637

Mature sequence

Rno-Mir-154-P6a-v2_3p

mirBase accession

MIMAT0000550

Sequence

34- GCACAUUACACGGUCGACCUCU -56

Get sequence

Proposed targets

microrna.org: MIMAT0000550
TargetScanVert: rno-miR-323-3p
miRDB: MIMAT0000550

Variant

Rno-Mir-154-P6a-v1

Seed

ACAUUAC

Precursor
(pre-Mir +30nt flank)

CCCUACUGCUGCUGCUUGGUACUUGGAGAGAGGUGGUCCGUGGCGCGUUCGCUUCAUUUAUGGCGCACAUUACACGGUCGACCUCUUUGCGGUAUCUAAUCCCGCCUUGCGAGCUU

Get precursor sequence

Structure

        10           20        30         40              50    
CCCUACUGCUGCUGCUU---     U  G        -  U     ------|   GUUCGCU 
                    GGUAC UG AGAGAGGU GG CCGUG      GCGC       U
                    CUAUG GC UUUCUCCA CU GGCAC      CGCG       C
UUCGAGCGUUCCGCCCUAAU     -  G        G  -     AUUACA^   GUAUUUA 
    110       100         90        80         70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17)

Tissue expression

Dr	Dr	Ad	Bi	Bi	Bi	Bi	Br	Br	Br	Br	Ce	Ce	Ce	Ce	Co	Co	Co	Co	Du	Du	Du	Du	Fa	He	He	He	Hi	Hi	Il	Il	Je	Je	Ki	Ki	Ki	Ki	Ki	La	Li	Li	Li	Li	Li	Li	Lu	Me	Me	Mu	Ov	Pa	Pa	Pa	Sk	Sm	So	So	So	So	Sp	St	St	St	St	Te	Te	Th	Ut	Wh

Star sequence

Rno-Mir-154-P6a-v1_5p*

mirBase accession

MIMAT0004637

Sequence

0- AGGUGGUCCGUGGCGCGUUCG -21

Get sequence

Proposed targets

microrna.org: MIMAT0004637
TargetScanVert: rno-miR-323-5p
miRDB: MIMAT0004637

Mature sequence

Rno-Mir-154-P6a-v1_3p

mirBase accession

MIMAT0000550

Sequence

35- CACAUUACACGGUCGACCUCU -56

Get sequence

Proposed targets

microrna.org: MIMAT0000550
TargetScanVert: rno-miR-323-3p
miRDB: MIMAT0000550