Mir-154-P28-v1

MirGeneDB ID

Rno-Mir-154-P28

Family name

MIR-154 (all species)

Species

Norway rat (Rattus norvegicus)

MiRBase ID

rno-mir-496

Paralogues

Rno-Mir-154-P1 Rno-Mir-154-P2-v1 Rno-Mir-154-P3-v1 Rno-Mir-154-P4 Rno-Mir-154-P6a-v1 Rno-Mir-154-P7 Rno-Mir-154-P8-o1 Rno-Mir-154-P9 Rno-Mir-154-P10 Rno-Mir-154-P11 Rno-Mir-154-P12 Rno-Mir-154-P15 Rno-Mir-154-P17 Rno-Mir-154-P18 Rno-Mir-154-P19 Rno-Mir-154-P24 Rno-Mir-154-P25 Rno-Mir-154-P26 Rno-Mir-154-P29 Rno-Mir-154-P30 Rno-Mir-154-P31 Rno-Mir-154-P32 Rno-Mir-154-P33

Orthologues

Bta-Mir-154-P28 Cfa-Mir-154-P28 Cja-Mir-154-P28 Cpo-Mir-154-P28-v1 Dno-Mir-154-P28-v1 Eca-Mir-154-P28 Ete-Mir-154-P28-v1 Hsa-Mir-154-P28-v1 Laf-Mir-154-P28 Mml-Mir-154-P28-v1 Mmr-Mir-154-P28 Mmu-Mir-154-P28-v1 Ocu-Mir-154-P28-v1 Pab-Mir-154-P28

Node of Origin (locus)

Eutheria

Node of Origin (family)

Eutheria

Genome context
(rn6)

chr6: 133889297-133889350 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-154-P28-v1)

Mir-154-P1 chr6: 133857715-133857772 [+] UCSC Ensembl
Mir-154-P2-v2 chr6: 133858858-133858915 [+] UCSC Ensembl
Mir-154-P2-v1 chr6: 133858859-133858914 [+] UCSC Ensembl
Mir-154-P3-v1 chr6: 133859329-133859383 [+] UCSC Ensembl
Mir-154-P3-v2 chr6: 133859330-133859382 [+] UCSC Ensembl
Mir-154-P4 chr6: 133860500-133860556 [+] UCSC Ensembl
Mir-154-P6a-v1 chr6: 133861214-133861269 [+] UCSC Ensembl
Mir-154-P6a-v2 chr6: 133861214-133861269 [+] UCSC Ensembl
Mir-154-P7 chr6: 133861509-133861566 [+] UCSC Ensembl
Mir-154-P8-o1 chr6: 133862190-133862249 [+] UCSC Ensembl
Mir-154-P9 chr6: 133864385-133864440 [+] UCSC Ensembl
Mir-154-P10 chr6: 133864729-133864785 [+] UCSC Ensembl
Mir-666 chr6: 133866541-133866601 [+] UCSC Ensembl
Mir-154-P11 chr6: 133866672-133866729 [+] UCSC Ensembl
Mir-154-P12 chr6: 133868298-133868357 [+] UCSC Ensembl
Mir-667 chr6: 133869584-133869647 [+] UCSC Ensembl
Mir-376-P2 chr6: 133872453-133872510 [+] UCSC Ensembl
Mir-376-P4 chr6: 133873110-133873167 [+] UCSC Ensembl
Mir-376-P5 chr6: 133873618-133873675 [+] UCSC Ensembl
Mir-154-P15 chr6: 133874161-133874223 [+] UCSC Ensembl
Mir-154-P17 chr6: 133876615-133876677 [+] UCSC Ensembl
Mir-154-P18 chr6: 133877137-133877194 [+] UCSC Ensembl
Mir-154-P19 chr6: 133877840-133877901 [+] UCSC Ensembl
Mir-544 chr6: 133879179-133879235 [+] UCSC Ensembl
Mir-154-P24 chr6: 133884190-133884247 [+] UCSC Ensembl
Mir-134 chr6: 133884554-133884614 [+] UCSC Ensembl
Mir-154-P25 chr6: 133885310-133885368 [+] UCSC Ensembl
Mir-154-P26 chr6: 133888600-133888657 [+] UCSC Ensembl
Mir-154-P28-v2 chr6: 133889296-133889351 [+] UCSC Ensembl
Mir-154-P28-v1 chr6: 133889297-133889350 [+] UCSC Ensembl
Mir-154-P29 chr6: 133890697-133890756 [+] UCSC Ensembl
Mir-541 chr6: 133892668-133892733 [+] UCSC Ensembl
Mir-154-P30 chr6: 133893432-133893485 [+] UCSC Ensembl
Mir-154-P31 chr6: 133893579-133893634 [+] UCSC Ensembl
Mir-154-P32 chr6: 133893706-133893761 [+] UCSC Ensembl
Mir-154-P33 chr6: 133894007-133894062 [+] UCSC Ensembl
Mir-3072 chr6: 133898823-133898879 [+] UCSC Ensembl

Variant

Rno-Mir-154-P28-v1

Seed

GAGUAUU

Precursor
(pre-Mir +30nt flank)

CAAGCUCUCGAAAUCAAGUGUUCGAAUGGAGGUUGUCCAUGGUGUGUUCAUUUUAUUUAUGAUGAGUAUUACAUGGCCAAUCUCCUUUCGGCACUAAAAUCUUCCUGGGAGAGC

Get precursor sequence

Structure

        10           20        30        40        50      
CAAGCUCUCGAAAUCAA---|   U    U        U     GU         UUA 
                    GUGU CGAA GGAGGUUG CCAUG  GUGUUCAUU   U
                    CACG GCUU CCUCUAAC GGUAC  UAUGAGUAG   U
CGAGAGGGUCCUUCUAAAAU^   -    U        C     AU         UAU 
  110       100         90        80        70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Dr	Dr	Ad	Bi	Bi	Bi	Bi	Br	Br	Br	Br	Ce	Ce	Ce	Ce	Co	Co	Co	Co	Du	Du	Du	Du	Fa	He	He	He	Hi	Hi	Il	Il	Je	Je	Ki	Ki	Ki	Ki	Ki	La	Li	Li	Li	Li	Li	Li	Lu	Me	Me	Mu	Ov	Pa	Pa	Pa	Sk	Sm	So	So	So	So	Sp	St	St	St	St	Te	Te	Th	Ut	Wh

Star sequence

Rno-Mir-154-P28-v1_5p*

mirBase accession

MIMAT0017372

Sequence

0- GGUUGUCCAUGGUGUGUUCAUU -22

Get sequence

Proposed targets

TargetScanVert: rno-miR-496-5p
miRDB: MIMAT0017372

Mature sequence

Rno-Mir-154-P28-v1_3p

mirBase accession

MIMAT0012860

Sequence

32- UGAGUAUUACAUGGCCAAUCUC -54

Get sequence

Proposed targets

microrna.org: MIMAT0012860
TargetScanVert: rno-miR-496-3p
miRDB: MIMAT0012860

Variant

Rno-Mir-154-P28-v2

Seed

GUAUUAC

Precursor
(pre-Mir +30nt flank)

GCAAGCUCUCGAAAUCAAGUGUUCGAAUGGAGGUUGUCCAUGGUGUGUUCAUUUUAUUUAUGAUGAGUAUUACAUGGCCAAUCUCCUUUCGGCACUAAAAUCUUCCUGGGAGAGCU

Get precursor sequence

Structure

        10           20        30        40        50       
GCAAGCUCUCGAAAUCA---|    U    U        U     GU        UUUA 
                    AGUGU CGAA GGAGGUUG CCAUG  GUGUUCAU    U
                    UCACG GCUU CCUCUAAC GGUAC  UAUGAGUA    U
UCGAGAGGGUCCUUCUAAAA^    -    U        C     AU        GUAU 
    110       100         90        80        70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Dr	Dr	Ad	Bi	Bi	Bi	Bi	Br	Br	Br	Br	Ce	Ce	Ce	Ce	Co	Co	Co	Co	Du	Du	Du	Du	Fa	He	He	He	Hi	Hi	Il	Il	Je	Je	Ki	Ki	Ki	Ki	Ki	La	Li	Li	Li	Li	Li	Li	Lu	Me	Me	Mu	Ov	Pa	Pa	Pa	Sk	Sm	So	So	So	So	Sp	St	St	St	St	Te	Te	Th	Ut	Wh

Star sequence

Rno-Mir-154-P28-v2_5p*

mirBase accession

MIMAT0017372

Sequence

0- AGGUUGUCCAUGGUGUGUUCAUU -23

Get sequence

Proposed targets

TargetScanVert: rno-miR-496-5p
miRDB: MIMAT0017372

Mature sequence

Rno-Mir-154-P28-v2_3p

mirBase accession

MIMAT0012860

Sequence

35- AGUAUUACAUGGCCAAUCUCC -56

Get sequence

Proposed targets

microrna.org: MIMAT0012860
TargetScanVert: rno-miR-496-3p
miRDB: MIMAT0012860