Mir-154-P28

MirGeneDB ID

Eca-Mir-154-P28

Family name

MIR-154 (all species)

Species

Horse (Equus caballus)

MiRBase ID

eca-mir-496

Paralogues

Eca-Mir-154-P1 Eca-Mir-154-P2-v1 Eca-Mir-154-P3-v1 Eca-Mir-154-P4 Eca-Mir-154-P5 Eca-Mir-154-P6a-v1 Eca-Mir-154-P6b Eca-Mir-154-P6c Eca-Mir-154-P7 Eca-Mir-154-P8a Eca-Mir-154-P8b Eca-Mir-154-P9 Eca-Mir-154-P10 Eca-Mir-154-P11 Eca-Mir-154-P12 Eca-Mir-154-P16 Eca-Mir-154-P17 Eca-Mir-154-P18 Eca-Mir-154-P19-v1 Eca-Mir-154-P20 Eca-Mir-154-P21 Eca-Mir-154-P22 Eca-Mir-154-P23 Eca-Mir-154-P24 Eca-Mir-154-P25 Eca-Mir-154-P26 Eca-Mir-154-P27 Eca-Mir-154-P29 Eca-Mir-154-P30 Eca-Mir-154-P31 Eca-Mir-154-P32 Eca-Mir-154-P33 Eca-Mir-154-P34 Eca-Mir-154-P35

Orthologues

Bta-Mir-154-P28 Cfa-Mir-154-P28 Cja-Mir-154-P28 Cpo-Mir-154-P28-v1 Dno-Mir-154-P28-v1 Ete-Mir-154-P28-v1 Hsa-Mir-154-P28-v1 Laf-Mir-154-P28 Mml-Mir-154-P28-v1 Mmr-Mir-154-P28 Mmu-Mir-154-P28-v1 Ocu-Mir-154-P28-v1 Pab-Mir-154-P28 Rno-Mir-154-P28-v1

Node of Origin (locus)

Eutheria

Node of Origin (family)

Eutheria

Genome context
(GCA_002863925.1_EquCab3.0)

CM009171.1: 43369646-43369699 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-154-P28)

Mir-154-P1 CM009171.1: 43333278-43333336 [+] UCSC Ensembl
Mir-154-P2-v2 CM009171.1: 43334539-43334596 [+] UCSC Ensembl
Mir-154-P2-v1 CM009171.1: 43334540-43334595 [+] UCSC Ensembl
Mir-154-P3-v1 CM009171.1: 43334998-43335052 [+] UCSC Ensembl
Mir-154-P3-v2 CM009171.1: 43334999-43335051 [+] UCSC Ensembl
Mir-154-P4 CM009171.1: 43336225-43336281 [+] UCSC Ensembl
Mir-154-P5 CM009171.1: 43336787-43336842 [+] UCSC Ensembl
Mir-154-P6a-v1 CM009171.1: 43336949-43337004 [+] UCSC Ensembl
Mir-154-P6a-v2 CM009171.1: 43336949-43337004 [+] UCSC Ensembl
Mir-154-P7 CM009171.1: 43337244-43337301 [+] UCSC Ensembl
Mir-154-P8a CM009171.1: 43338005-43338064 [+] UCSC Ensembl
Mir-154-P8b CM009171.1: 43338319-43338377 [+] UCSC Ensembl
Mir-154-P9 CM009171.1: 43340815-43340870 [+] UCSC Ensembl
Mir-154-P10 CM009171.1: 43341251-43341307 [+] UCSC Ensembl
Mir-154-P11 CM009171.1: 43342885-43342942 [+] UCSC Ensembl
Mir-154-P12 CM009171.1: 43344729-43344786 [+] UCSC Ensembl
Mir-154-P35 CM009171.1: 43346710-43346765 [+] UCSC Ensembl
Mir-376-P1 CM009171.1: 43349399-43349456 [+] UCSC Ensembl
Mir-376-P2 CM009171.1: 43349741-43349798 [+] UCSC Ensembl
Mir-376-P3 CM009171.1: 43350119-43350176 [+] UCSC Ensembl
Mir-376-P4 CM009171.1: 43350501-43350558 [+] UCSC Ensembl
Mir-376-P5 CM009171.1: 43350872-43350929 [+] UCSC Ensembl
Mir-154-P16 CM009171.1: 43352997-43353056 [+] UCSC Ensembl
Mir-154-P17 CM009171.1: 43354693-43354755 [+] UCSC Ensembl
Mir-154-P18 CM009171.1: 43355166-43355223 [+] UCSC Ensembl
Mir-154-P19-v1 CM009171.1: 43356005-43356068 [+] UCSC Ensembl
Mir-154-P19-v2 CM009171.1: 43356007-43356066 [+] UCSC Ensembl
Mir-154-P20 CM009171.1: 43356582-43356640 [+] UCSC Ensembl
Mir-544 CM009171.1: 43357342-43357399 [+] UCSC Ensembl
Mir-154-P21 CM009171.1: 43358248-43358307 [+] UCSC Ensembl
Mir-154-P22 CM009171.1: 43360203-43360256 [+] UCSC Ensembl
Mir-154-P23 CM009171.1: 43360636-43360693 [+] UCSC Ensembl
Mir-154-P24 CM009171.1: 43363504-43363561 [+] UCSC Ensembl
Mir-134 CM009171.1: 43363883-43363944 [+] UCSC Ensembl
Mir-154-P25 CM009171.1: 43364626-43364684 [+] UCSC Ensembl
Mir-154-P6b CM009171.1: 43365428-43365484 [+] UCSC Ensembl
Mir-154-P26 CM009171.1: 43368798-43368855 [+] UCSC Ensembl
Mir-154-P27 CM009171.1: 43369085-43369145 [+] UCSC Ensembl
Mir-154-P28 CM009171.1: 43369646-43369699 [+] UCSC Ensembl
Mir-154-P29 CM009171.1: 43371377-43371436 [+] UCSC Ensembl
Mir-541 CM009171.1: 43373355-43373420 [+] UCSC Ensembl
Mir-154-P30 CM009171.1: 43374280-43374333 [+] UCSC Ensembl
Mir-154-P31 CM009171.1: 43374430-43374485 [+] UCSC Ensembl
Mir-154-P32 CM009171.1: 43374573-43374628 [+] UCSC Ensembl
Mir-154-P33 CM009171.1: 43374903-43374958 [+] UCSC Ensembl
Mir-154-P6c CM009171.1: 43375410-43375465 [+] UCSC Ensembl
Mir-154-P34 CM009171.1: 43375650-43375705 [+] UCSC Ensembl

Seed

GAGUAUU

Precursor
(pre-Mir +30nt flank)

GCCAGCACCCUAGCCAGGUACUCGAAUGGAGGUUGUCCAUGGUGUGUUCAUUUUAUUUAUGAUGAGUAUUACAUGGCCAAUCUCCUUUCAGUACUAAAUUCUUCUUGGGAAAAC

Get precursor sequence

Structure

        10           20        30        40        50      
GCCAGCACCCUAGCCAG---|    C   U        U     GU         UUA 
                    GUACU GAA GGAGGUUG CCAUG  GUGUUCAUU   U
                    CAUGA CUU CCUCUAAC GGUAC  UAUGAGUAG   U
CAAAAGGGUUCUUCUUAAAU^    -   U        C     AU         UAU 
  110       100        90         80        70        60

Deep sequencing

Go to detailed chart

Comment

Cow and dog do not express the second version that the other eutherians express.

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Ps	Bo	Ca	Em	En	En	En	En	En	En	En	Gl	He	He	Ho	Im	Ki	Li	Lo	Lu	Ma	Ma	Mi	Pl	Sp	Te	Tr	Ut	Ut	Yo

Star sequence

Eca-Mir-154-P28_5p* (predicted)

mirBase accession

None

Sequence

0- GGUUGUCCAUGGUGUGUUCAUU -22

Get sequence

Mature sequence

Eca-Mir-154-P28_3p

mirBase accession

MIMAT0013166

Sequence

32- UGAGUAUUACAUGGCCAAUCUC -54

Get sequence