Mir-154-P6a-v2

MirGeneDB ID

Eca-Mir-154-P6a

Family name

MIR-154 (all species)

Species

Horse (Equus caballus)

MiRBase ID

eca-mir-323

Paralogues

Eca-Mir-154-P1 Eca-Mir-154-P2-v1 Eca-Mir-154-P3-v1 Eca-Mir-154-P4 Eca-Mir-154-P5 Eca-Mir-154-P6a-v1 Eca-Mir-154-P6b Eca-Mir-154-P6c Eca-Mir-154-P7 Eca-Mir-154-P8a Eca-Mir-154-P8b Eca-Mir-154-P9 Eca-Mir-154-P10 Eca-Mir-154-P11 Eca-Mir-154-P12 Eca-Mir-154-P16 Eca-Mir-154-P17 Eca-Mir-154-P18 Eca-Mir-154-P19-v1 Eca-Mir-154-P20 Eca-Mir-154-P21 Eca-Mir-154-P22 Eca-Mir-154-P23 Eca-Mir-154-P24 Eca-Mir-154-P25 Eca-Mir-154-P26 Eca-Mir-154-P27 Eca-Mir-154-P28 Eca-Mir-154-P29 Eca-Mir-154-P30 Eca-Mir-154-P31 Eca-Mir-154-P32 Eca-Mir-154-P33 Eca-Mir-154-P34 Eca-Mir-154-P35

Orthologues

Bta-Mir-154-P6a-v1 Cfa-Mir-154-P6a-v1 Cja-Mir-154-P6a Cpo-Mir-154-P6a-v1 Dno-Mir-154-P6a-v1 Ete-Mir-154-P6a-v1 Hsa-Mir-154-P6a-v1 Laf-Mir-154-P6a Mml-Mir-154-P6a-v1 Mmr-Mir-154-P6a-v1 Mmu-Mir-154-P6a-v1 Ocu-Mir-154-P6a-v1 Pab-Mir-154-P6a-v1 Rno-Mir-154-P6a-v1

Node of Origin (locus)

Eutheria

Node of Origin (family)

Eutheria

Genome context
(GCA_002863925.1_EquCab3.0)

CM009171.1: 43336949-43337004 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-154-P6a-v2)

Mir-154-P1 CM009171.1: 43333278-43333336 [+] UCSC Ensembl
Mir-154-P2-v2 CM009171.1: 43334539-43334596 [+] UCSC Ensembl
Mir-154-P2-v1 CM009171.1: 43334540-43334595 [+] UCSC Ensembl
Mir-154-P3-v1 CM009171.1: 43334998-43335052 [+] UCSC Ensembl
Mir-154-P3-v2 CM009171.1: 43334999-43335051 [+] UCSC Ensembl
Mir-154-P4 CM009171.1: 43336225-43336281 [+] UCSC Ensembl
Mir-154-P5 CM009171.1: 43336787-43336842 [+] UCSC Ensembl
Mir-154-P6a-v1 CM009171.1: 43336949-43337004 [+] UCSC Ensembl
Mir-154-P6a-v2 CM009171.1: 43336949-43337004 [+] UCSC Ensembl
Mir-154-P7 CM009171.1: 43337244-43337301 [+] UCSC Ensembl
Mir-154-P8a CM009171.1: 43338005-43338064 [+] UCSC Ensembl
Mir-154-P8b CM009171.1: 43338319-43338377 [+] UCSC Ensembl
Mir-154-P9 CM009171.1: 43340815-43340870 [+] UCSC Ensembl
Mir-154-P10 CM009171.1: 43341251-43341307 [+] UCSC Ensembl
Mir-154-P11 CM009171.1: 43342885-43342942 [+] UCSC Ensembl
Mir-154-P12 CM009171.1: 43344729-43344786 [+] UCSC Ensembl
Mir-154-P35 CM009171.1: 43346710-43346765 [+] UCSC Ensembl
Mir-376-P1 CM009171.1: 43349399-43349456 [+] UCSC Ensembl
Mir-376-P2 CM009171.1: 43349741-43349798 [+] UCSC Ensembl
Mir-376-P3 CM009171.1: 43350119-43350176 [+] UCSC Ensembl
Mir-376-P4 CM009171.1: 43350501-43350558 [+] UCSC Ensembl
Mir-376-P5 CM009171.1: 43350872-43350929 [+] UCSC Ensembl
Mir-154-P16 CM009171.1: 43352997-43353056 [+] UCSC Ensembl
Mir-154-P17 CM009171.1: 43354693-43354755 [+] UCSC Ensembl
Mir-154-P18 CM009171.1: 43355166-43355223 [+] UCSC Ensembl
Mir-154-P19-v1 CM009171.1: 43356005-43356068 [+] UCSC Ensembl
Mir-154-P19-v2 CM009171.1: 43356007-43356066 [+] UCSC Ensembl
Mir-154-P20 CM009171.1: 43356582-43356640 [+] UCSC Ensembl
Mir-544 CM009171.1: 43357342-43357399 [+] UCSC Ensembl
Mir-154-P21 CM009171.1: 43358248-43358307 [+] UCSC Ensembl
Mir-154-P22 CM009171.1: 43360203-43360256 [+] UCSC Ensembl
Mir-154-P23 CM009171.1: 43360636-43360693 [+] UCSC Ensembl
Mir-154-P24 CM009171.1: 43363504-43363561 [+] UCSC Ensembl
Mir-134 CM009171.1: 43363883-43363944 [+] UCSC Ensembl
Mir-154-P25 CM009171.1: 43364626-43364684 [+] UCSC Ensembl
Mir-154-P6b CM009171.1: 43365428-43365484 [+] UCSC Ensembl
Mir-154-P26 CM009171.1: 43368798-43368855 [+] UCSC Ensembl
Mir-154-P27 CM009171.1: 43369085-43369145 [+] UCSC Ensembl
Mir-154-P28 CM009171.1: 43369646-43369699 [+] UCSC Ensembl
Mir-154-P29 CM009171.1: 43371377-43371436 [+] UCSC Ensembl
Mir-541 CM009171.1: 43373355-43373420 [+] UCSC Ensembl
Mir-154-P30 CM009171.1: 43374280-43374333 [+] UCSC Ensembl
Mir-154-P31 CM009171.1: 43374430-43374485 [+] UCSC Ensembl
Mir-154-P32 CM009171.1: 43374573-43374628 [+] UCSC Ensembl
Mir-154-P33 CM009171.1: 43374903-43374958 [+] UCSC Ensembl
Mir-154-P6c CM009171.1: 43375410-43375465 [+] UCSC Ensembl
Mir-154-P34 CM009171.1: 43375650-43375705 [+] UCSC Ensembl

Variant

Eca-Mir-154-P6a-v2

Seed

CACAUUA

Precursor
(pre-Mir +30nt flank)

CAGUACUGCUGCUGCUUGGUACUUGGAGAGAGGUGGUCCGUGGCGCGUUCGCUUUAUUUAUGGCGCACAUUACACGGUCGACCUCUUUGCAGUAUCUAAUCCCGCCUGGCAAGCUU

Get precursor sequence

Structure

        10           20        30         40        50       
CAGUACUGCUGCUGCUU---|     U G        -  U     GCGC  U   UUUA 
                    GGUACU G AGAGAGGU GG CCGUG    GU CGC    U
                    CUAUGA C UUUCUCCA CU GGCAC    CA GCG    U
UUCGAACGGUCCGCCCUAAU^     - G        G  -     AUUA  C   GUAU 
    110       100         90        80         70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17)

Tissue expression

Ps	Bo	Ca	Em	En	En	En	En	En	En	En	Gl	He	He	Ho	Im	Ki	Li	Lo	Lu	Ma	Ma	Mi	Pl	Sp	Te	Tr	Ut	Ut	Yo

Star sequence

Eca-Mir-154-P6a-v2_5p*

mirBase accession

MIMAT0013131

Sequence

0- AGGUGGUCCGUGGCGCGUUCGC -22

Get sequence

Mature sequence

Eca-Mir-154-P6a-v2_3p

mirBase accession

MIMAT0013132

Sequence

34- GCACAUUACACGGUCGACCUCU -56

Get sequence

Variant

Eca-Mir-154-P6a-v1

Seed

ACAUUAC

Precursor
(pre-Mir +30nt flank)

CAGUACUGCUGCUGCUUGGUACUUGGAGAGAGGUGGUCCGUGGCGCGUUCGCUUUAUUUAUGGCGCACAUUACACGGUCGACCUCUUUGCAGUAUCUAAUCCCGCCUGGCAAGCUU

Get precursor sequence

Structure

        10           20        30         40              50    
CAGUACUGCUGCUGCUU---     U  G        -  U     ------|   GUUCGCU 
                    GGUAC UG AGAGAGGU GG CCGUG      GCGC       U
                    CUAUG AC UUUCUCCA CU GGCAC      CGCG       U
UUCGAACGGUCCGCCCUAAU     -  G        G  -     AUUACA^   GUAUUUA 
    110       100         90        80         70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17)

Tissue expression

Ps	Bo	Ca	Em	En	En	En	En	En	En	En	Gl	He	He	Ho	Im	Ki	Li	Lo	Lu	Ma	Ma	Mi	Pl	Sp	Te	Tr	Ut	Ut	Yo

Star sequence

Eca-Mir-154-P6a-v1_5p*

mirBase accession

MIMAT0013131

Sequence

0- AGGUGGUCCGUGGCGCGUUCG -21

Get sequence

Mature sequence

Eca-Mir-154-P6a-v1_3p

mirBase accession

MIMAT0013132

Sequence

35- CACAUUACACGGUCGACCUCU -56

Get sequence