MirGeneDB 3.0
MirGeneDB ID

Eca-Mir-154-P19

Family name MIR-154 (all species)
Species Horse (Equus caballus)
MiRBase ID eca-mir-539
Paralogues Eca-Mir-154-P1  Eca-Mir-154-P2-v1  Eca-Mir-154-P3-v1  Eca-Mir-154-P4  Eca-Mir-154-P5  Eca-Mir-154-P6a-v1  Eca-Mir-154-P6b  Eca-Mir-154-P6c  Eca-Mir-154-P7  Eca-Mir-154-P8a  Eca-Mir-154-P8b  Eca-Mir-154-P9  Eca-Mir-154-P10  Eca-Mir-154-P11  Eca-Mir-154-P12  Eca-Mir-154-P16  Eca-Mir-154-P17  Eca-Mir-154-P18  Eca-Mir-154-P19-v1  Eca-Mir-154-P20  Eca-Mir-154-P21  Eca-Mir-154-P22  Eca-Mir-154-P23  Eca-Mir-154-P24  Eca-Mir-154-P25  Eca-Mir-154-P26  Eca-Mir-154-P27  Eca-Mir-154-P28  Eca-Mir-154-P29  Eca-Mir-154-P30  Eca-Mir-154-P31  Eca-Mir-154-P32  Eca-Mir-154-P33  Eca-Mir-154-P34  Eca-Mir-154-P35 
Orthologues Bta-Mir-154-P19  Cfa-Mir-154-P19  Cja-Mir-154-P19  Cpo-Mir-154-P19  Dno-Mir-154-P19  Ete-Mir-154-P19  Hsa-Mir-154-P19  Laf-Mir-154-P19  Mml-Mir-154-P19  Mmu-Mir-154-P19  Ocu-Mir-154-P19  Pab-Mir-154-P19  Rno-Mir-154-P19 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(GCA_002863925.1_EquCab3.0)		 CM009171.1: 43356007-43356066 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-154-P19-v2)		 Mir-154-P1 CM009171.1: 43333278-43333336 [+] UCSC Ensembl
Mir-154-P2-v2 CM009171.1: 43334539-43334596 [+] UCSC Ensembl
Mir-154-P2-v1 CM009171.1: 43334540-43334595 [+] UCSC Ensembl
Mir-154-P3-v1 CM009171.1: 43334998-43335052 [+] UCSC Ensembl
Mir-154-P3-v2 CM009171.1: 43334999-43335051 [+] UCSC Ensembl
Mir-154-P4 CM009171.1: 43336225-43336281 [+] UCSC Ensembl
Mir-154-P5 CM009171.1: 43336787-43336842 [+] UCSC Ensembl
Mir-154-P6a-v1 CM009171.1: 43336949-43337004 [+] UCSC Ensembl
Mir-154-P6a-v2 CM009171.1: 43336949-43337004 [+] UCSC Ensembl
Mir-154-P7 CM009171.1: 43337244-43337301 [+] UCSC Ensembl
Mir-154-P8a CM009171.1: 43338005-43338064 [+] UCSC Ensembl
Mir-154-P8b CM009171.1: 43338319-43338377 [+] UCSC Ensembl
Mir-154-P9 CM009171.1: 43340815-43340870 [+] UCSC Ensembl
Mir-154-P10 CM009171.1: 43341251-43341307 [+] UCSC Ensembl
Mir-154-P11 CM009171.1: 43342885-43342942 [+] UCSC Ensembl
Mir-154-P12 CM009171.1: 43344729-43344786 [+] UCSC Ensembl
Mir-154-P35 CM009171.1: 43346710-43346765 [+] UCSC Ensembl
Mir-376-P1 CM009171.1: 43349399-43349456 [+] UCSC Ensembl
Mir-376-P2 CM009171.1: 43349741-43349798 [+] UCSC Ensembl
Mir-376-P3 CM009171.1: 43350119-43350176 [+] UCSC Ensembl
Mir-376-P4 CM009171.1: 43350501-43350558 [+] UCSC Ensembl
Mir-376-P5 CM009171.1: 43350872-43350929 [+] UCSC Ensembl
Mir-154-P16 CM009171.1: 43352997-43353056 [+] UCSC Ensembl
Mir-154-P17 CM009171.1: 43354693-43354755 [+] UCSC Ensembl
Mir-154-P18 CM009171.1: 43355166-43355223 [+] UCSC Ensembl
Mir-154-P19-v1 CM009171.1: 43356005-43356068 [+] UCSC Ensembl
Mir-154-P19-v2 CM009171.1: 43356007-43356066 [+] UCSC Ensembl
Mir-154-P20 CM009171.1: 43356582-43356640 [+] UCSC Ensembl
Mir-544 CM009171.1: 43357342-43357399 [+] UCSC Ensembl
Mir-154-P21 CM009171.1: 43358248-43358307 [+] UCSC Ensembl
Mir-154-P22 CM009171.1: 43360203-43360256 [+] UCSC Ensembl
Mir-154-P23 CM009171.1: 43360636-43360693 [+] UCSC Ensembl
Mir-154-P24 CM009171.1: 43363504-43363561 [+] UCSC Ensembl
Mir-134 CM009171.1: 43363883-43363944 [+] UCSC Ensembl
Mir-154-P25 CM009171.1: 43364626-43364684 [+] UCSC Ensembl
Mir-154-P6b CM009171.1: 43365428-43365484 [+] UCSC Ensembl
Mir-154-P26 CM009171.1: 43368798-43368855 [+] UCSC Ensembl
Mir-154-P27 CM009171.1: 43369085-43369145 [+] UCSC Ensembl
Mir-154-P28 CM009171.1: 43369646-43369699 [+] UCSC Ensembl
Mir-154-P29 CM009171.1: 43371377-43371436 [+] UCSC Ensembl
Mir-541 CM009171.1: 43373355-43373420 [+] UCSC Ensembl
Mir-154-P30 CM009171.1: 43374280-43374333 [+] UCSC Ensembl
Mir-154-P31 CM009171.1: 43374430-43374485 [+] UCSC Ensembl
Mir-154-P32 CM009171.1: 43374573-43374628 [+] UCSC Ensembl
Mir-154-P33 CM009171.1: 43374903-43374958 [+] UCSC Ensembl
Mir-154-P6c CM009171.1: 43375410-43375465 [+] UCSC Ensembl
Mir-154-P34 CM009171.1: 43375650-43375705 [+] UCSC Ensembl
Variant

Eca-Mir-154-P19-v2
Seed UCAUACA
Precursor
(pre-Mir +30nt flank)		 
CCCGUCCGUGCCGCUGUUUCAUACUUGAGGAGAAAUUAUCCUUGCUGUGUUCGCUUUAUUUGUGAUGAAUCAUACAAGGACAAUUUCUUUUUGAGUAUCAAAUCCUGCUUCAGCGGACCU
Get precursor sequence
Structure
        10        20          30        40         50         
CCCGUCCGUGCCGCUGUUUC--|    UG          A      C    -   GCUUUA 
                      AUACU  AGGAGAAAUU UCCUUG UGUG UUC      U
                      UAUGA  UUUUCUUUAA AGGAAC AUAC AAG      U
UCCAGGCGACUUCGUCCUAAAC^    GU          C      -    U   UAGUGU 
.       110       100        90        80         70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
Ps Bo Ca Em En En En En En En En Gl He He Ho Im Ki Li Lo Lu Ma Ma Mi Pl Sp Te Tr Ut Ut Yo
Star sequence

Eca-Mir-154-P19-v2_5p*
mirBase accessionMIMAT0013167
Sequence 
0- AGAAAUUAUCCUUGCUGUGUUC -22
Get sequence
Mature sequence

Eca-Mir-154-P19-v2_3p
mirBase accessionNone
Sequence 
38- AUCAUACAAGGACAAUUUCUUU -60
Get sequence
Variant

Eca-Mir-154-P19-v1
Seed UACAAGG
Precursor
(pre-Mir +30nt flank)		 
UUCCCGUCCGUGCCGCUGUUUCAUACUUGAGGAGAAAUUAUCCUUGCUGUGUUCGCUUUAUUUGUGAUGAAUCAUACAAGGACAAUUUCUUUUUGAGUAUCAAAUCCUGCUUCAGCGGACCUCC
Get precursor sequence
Structure
        10          20        30        40        50        60  
UUCCCGUCCGUGCCGCU--|   C     UG          A      C    UUCGCUUUAU 
                   GUUU AUACU  AGGAGAAAUU UCCUUG UGUG          \
                   UAAA UAUGA  UUUUCUUUAA AGGAAC AUAC          U
CCUCCAGGCGACUUCGUCC^   C     GU          C      -    UAAGUAGUGU 
  120       110       100        90        80         70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
- +
Ps Bo Ca Em En En En En En En En Gl He He Ho Im Ki Li Lo Lu Ma Ma Mi Pl Sp Te Tr Ut Ut Yo
Star sequence

Eca-Mir-154-P19-v1_5p*
mirBase accessionMIMAT0013167
Sequence 
0- GGAGAAAUUAUCCUUGCUGUGU -22
Get sequence
Mature sequence

Eca-Mir-154-P19-v1_3p
mirBase accessionNone
Sequence 
43- AUACAAGGACAAUUUCUUUUU -64
Get sequence