Mir-376-P4

MirGeneDB ID

Eca-Mir-376-P4

Family name

MIR-376 (all species)

Species

Horse (Equus caballus)

MiRBase ID

Paralogues

Eca-Mir-376-P1 Eca-Mir-376-P2 Eca-Mir-376-P3 Eca-Mir-376-P5

Orthologues

Bta-Mir-376-P4 Cfa-Mir-376-P4 Cja-Mir-376-P4 Cpo-Mir-376-P4 Dno-Mir-376-P4 Hsa-Mir-376-P4 Laf-Mir-376-P4 Mml-Mir-376-P4 Mmr-Mir-376-P4 Mmu-Mir-376-P4 Ocu-Mir-376-P4 Pab-Mir-376-P4 Rno-Mir-376-P4

Node of Origin (locus)

Eutheria

Node of Origin (family)

Eutheria

Genome context
(GCA_002863925.1_EquCab3.0)

CM009171.1: 43350501-43350558 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-376-P4)

Mir-154-P1 CM009171.1: 43333278-43333336 [+] UCSC Ensembl
Mir-154-P2-v2 CM009171.1: 43334539-43334596 [+] UCSC Ensembl
Mir-154-P2-v1 CM009171.1: 43334540-43334595 [+] UCSC Ensembl
Mir-154-P3-v1 CM009171.1: 43334998-43335052 [+] UCSC Ensembl
Mir-154-P3-v2 CM009171.1: 43334999-43335051 [+] UCSC Ensembl
Mir-154-P4 CM009171.1: 43336225-43336281 [+] UCSC Ensembl
Mir-154-P5 CM009171.1: 43336787-43336842 [+] UCSC Ensembl
Mir-154-P6a-v1 CM009171.1: 43336949-43337004 [+] UCSC Ensembl
Mir-154-P6a-v2 CM009171.1: 43336949-43337004 [+] UCSC Ensembl
Mir-154-P7 CM009171.1: 43337244-43337301 [+] UCSC Ensembl
Mir-154-P8a CM009171.1: 43338005-43338064 [+] UCSC Ensembl
Mir-154-P8b CM009171.1: 43338319-43338377 [+] UCSC Ensembl
Mir-154-P9 CM009171.1: 43340815-43340870 [+] UCSC Ensembl
Mir-154-P10 CM009171.1: 43341251-43341307 [+] UCSC Ensembl
Mir-154-P11 CM009171.1: 43342885-43342942 [+] UCSC Ensembl
Mir-154-P12 CM009171.1: 43344729-43344786 [+] UCSC Ensembl
Mir-154-P35 CM009171.1: 43346710-43346765 [+] UCSC Ensembl
Mir-376-P1 CM009171.1: 43349399-43349456 [+] UCSC Ensembl
Mir-376-P2 CM009171.1: 43349741-43349798 [+] UCSC Ensembl
Mir-376-P3 CM009171.1: 43350119-43350176 [+] UCSC Ensembl
Mir-376-P4 CM009171.1: 43350501-43350558 [+] UCSC Ensembl
Mir-376-P5 CM009171.1: 43350872-43350929 [+] UCSC Ensembl
Mir-154-P16 CM009171.1: 43352997-43353056 [+] UCSC Ensembl
Mir-154-P17 CM009171.1: 43354693-43354755 [+] UCSC Ensembl
Mir-154-P18 CM009171.1: 43355166-43355223 [+] UCSC Ensembl
Mir-154-P19-v1 CM009171.1: 43356005-43356068 [+] UCSC Ensembl
Mir-154-P19-v2 CM009171.1: 43356007-43356066 [+] UCSC Ensembl
Mir-154-P20 CM009171.1: 43356582-43356640 [+] UCSC Ensembl
Mir-544 CM009171.1: 43357342-43357399 [+] UCSC Ensembl
Mir-154-P21 CM009171.1: 43358248-43358307 [+] UCSC Ensembl
Mir-154-P22 CM009171.1: 43360203-43360256 [+] UCSC Ensembl
Mir-154-P23 CM009171.1: 43360636-43360693 [+] UCSC Ensembl
Mir-154-P24 CM009171.1: 43363504-43363561 [+] UCSC Ensembl
Mir-134 CM009171.1: 43363883-43363944 [+] UCSC Ensembl
Mir-154-P25 CM009171.1: 43364626-43364684 [+] UCSC Ensembl
Mir-154-P6b CM009171.1: 43365428-43365484 [+] UCSC Ensembl
Mir-154-P26 CM009171.1: 43368798-43368855 [+] UCSC Ensembl
Mir-154-P27 CM009171.1: 43369085-43369145 [+] UCSC Ensembl
Mir-154-P28 CM009171.1: 43369646-43369699 [+] UCSC Ensembl
Mir-154-P29 CM009171.1: 43371377-43371436 [+] UCSC Ensembl
Mir-541 CM009171.1: 43373355-43373420 [+] UCSC Ensembl
Mir-154-P30 CM009171.1: 43374280-43374333 [+] UCSC Ensembl
Mir-154-P31 CM009171.1: 43374430-43374485 [+] UCSC Ensembl
Mir-154-P32 CM009171.1: 43374573-43374628 [+] UCSC Ensembl
Mir-154-P33 CM009171.1: 43374903-43374958 [+] UCSC Ensembl
Mir-154-P6c CM009171.1: 43375410-43375465 [+] UCSC Ensembl
Mir-154-P34 CM009171.1: 43375650-43375705 [+] UCSC Ensembl

Seed

UGGAUAU

Precursor
(pre-Mir +30nt flank)

AGAACUCAGUCCUUCUUUGGUAUUUAAAAGGUGGAUAUUCCUUCUAUGUUUACGUGAUUCAUAGAUAAUCAUAGAGGAAAAUCCAUGUUUUCAGUAUCAAAUGCUGCUUUGGAGAUAU

Get precursor sequence

Structure

        10          20        30        40        50         
AGAACUCAGUCCUUCUU--|      U    G      A     U     U   CGUGAU 
                   UGGUAUU AAAA GUGGAU UUCCU CUAUG UUA      \
                   ACUAUGA UUUU UACCUA AAGGA GAUAC AAU      U
UAUAGAGGUUUCGUCGUAA^      C    G      A     -     U   AGAUAC 
      110       100        90        80         70        60

Deep sequencing

Go to detailed chart

Comment

There is a second Drosha cut -1 on both arms.

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Ps	Bo	Ca	Em	En	En	En	En	En	En	En	Gl	He	He	Ho	Im	Ki	Li	Lo	Lu	Ma	Ma	Mi	Pl	Sp	Te	Tr	Ut	Ut	Yo

Mature sequence

Eca-Mir-376-P4_5p

mirBase accession

None

Sequence

0- GUGGAUAUUCCUUCUAUGUUUA -22

Get sequence

Star sequence

Eca-Mir-376-P4_3p*

mirBase accession

None

Sequence

37- AUCAUAGAGGAAAAUCCAUGU -58

Get sequence