Mir-154-P19

MirGeneDB ID

Rno-Mir-154-P19

Family name

MIR-154 (all species)

Species

Norway rat (Rattus norvegicus)

MiRBase ID

rno-mir-539

Paralogues

Rno-Mir-154-P1 Rno-Mir-154-P2-v1 Rno-Mir-154-P3-v1 Rno-Mir-154-P4 Rno-Mir-154-P6a-v1 Rno-Mir-154-P7 Rno-Mir-154-P8-o1 Rno-Mir-154-P9 Rno-Mir-154-P10 Rno-Mir-154-P11 Rno-Mir-154-P12 Rno-Mir-154-P15 Rno-Mir-154-P17 Rno-Mir-154-P18 Rno-Mir-154-P24 Rno-Mir-154-P25 Rno-Mir-154-P26 Rno-Mir-154-P28-v1 Rno-Mir-154-P29 Rno-Mir-154-P30 Rno-Mir-154-P31 Rno-Mir-154-P32 Rno-Mir-154-P33

Orthologues

Bta-Mir-154-P19 Cfa-Mir-154-P19 Cja-Mir-154-P19 Cpo-Mir-154-P19 Dno-Mir-154-P19 Eca-Mir-154-P19-v1 Ete-Mir-154-P19 Hsa-Mir-154-P19 Laf-Mir-154-P19 Mml-Mir-154-P19 Mmu-Mir-154-P19 Ocu-Mir-154-P19 Pab-Mir-154-P19

Node of Origin (locus)

Eutheria

Node of Origin (family)

Eutheria

Genome context
(rn6)

chr6: 133877840-133877901 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-154-P19)

Mir-154-P1 chr6: 133857715-133857772 [+] UCSC Ensembl
Mir-154-P2-v2 chr6: 133858858-133858915 [+] UCSC Ensembl
Mir-154-P2-v1 chr6: 133858859-133858914 [+] UCSC Ensembl
Mir-154-P3-v1 chr6: 133859329-133859383 [+] UCSC Ensembl
Mir-154-P3-v2 chr6: 133859330-133859382 [+] UCSC Ensembl
Mir-154-P4 chr6: 133860500-133860556 [+] UCSC Ensembl
Mir-154-P6a-v1 chr6: 133861214-133861269 [+] UCSC Ensembl
Mir-154-P6a-v2 chr6: 133861214-133861269 [+] UCSC Ensembl
Mir-154-P7 chr6: 133861509-133861566 [+] UCSC Ensembl
Mir-154-P8-o1 chr6: 133862190-133862249 [+] UCSC Ensembl
Mir-154-P9 chr6: 133864385-133864440 [+] UCSC Ensembl
Mir-154-P10 chr6: 133864729-133864785 [+] UCSC Ensembl
Mir-666 chr6: 133866541-133866601 [+] UCSC Ensembl
Mir-154-P11 chr6: 133866672-133866729 [+] UCSC Ensembl
Mir-154-P12 chr6: 133868298-133868357 [+] UCSC Ensembl
Mir-667 chr6: 133869584-133869647 [+] UCSC Ensembl
Mir-376-P2 chr6: 133872453-133872510 [+] UCSC Ensembl
Mir-376-P4 chr6: 133873110-133873167 [+] UCSC Ensembl
Mir-376-P5 chr6: 133873618-133873675 [+] UCSC Ensembl
Mir-154-P15 chr6: 133874161-133874223 [+] UCSC Ensembl
Mir-154-P17 chr6: 133876615-133876677 [+] UCSC Ensembl
Mir-154-P18 chr6: 133877137-133877194 [+] UCSC Ensembl
Mir-154-P19 chr6: 133877840-133877901 [+] UCSC Ensembl
Mir-544 chr6: 133879179-133879235 [+] UCSC Ensembl
Mir-154-P24 chr6: 133884190-133884247 [+] UCSC Ensembl
Mir-134 chr6: 133884554-133884614 [+] UCSC Ensembl
Mir-154-P25 chr6: 133885310-133885368 [+] UCSC Ensembl
Mir-154-P26 chr6: 133888600-133888657 [+] UCSC Ensembl
Mir-154-P28-v2 chr6: 133889296-133889351 [+] UCSC Ensembl
Mir-154-P28-v1 chr6: 133889297-133889350 [+] UCSC Ensembl
Mir-154-P29 chr6: 133890697-133890756 [+] UCSC Ensembl
Mir-541 chr6: 133892668-133892733 [+] UCSC Ensembl
Mir-154-P30 chr6: 133893432-133893485 [+] UCSC Ensembl
Mir-154-P31 chr6: 133893579-133893634 [+] UCSC Ensembl
Mir-154-P32 chr6: 133893706-133893761 [+] UCSC Ensembl
Mir-154-P33 chr6: 133894007-133894062 [+] UCSC Ensembl
Mir-3072 chr6: 133898823-133898879 [+] UCSC Ensembl

Seed

GAGAAAU

Precursor
(pre-Mir +30nt flank)

AUUCCUGCUGUGCUACUGUUUCAUACUUGAGGAGAAAUUAUCCUUGGUGUGUUUGCUCUUUUGGAUGAAUCAUACAAGGGUAAUUUCUUUUCGAGUAUCAAAUACUGCCCUGGCGGACUUCC

Get precursor sequence

Structure

        10          20        30        40        50        60 
AUUCCUGCUGUGCUACU--|   C                        G    UUUGCUCUU 
                   GUUU AUACUUGAGGAGAAAUUAUCCUUG UGUG         \
                   UAAA UAUGAGCUUUUCUUUAAUGGGAAC AUAC         U
CCUUCAGGCGGUCCCGUCA^   C                        -    UAAGUAGGU 
120       110       100        90        80         70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UG at 5p(-14)

Tissue expression

Dr	Dr	Ad	Bi	Bi	Bi	Bi	Br	Br	Br	Br	Ce	Ce	Ce	Ce	Co	Co	Co	Co	Du	Du	Du	Du	Fa	He	He	He	Hi	Hi	Il	Il	Je	Je	Ki	Ki	Ki	Ki	Ki	La	Li	Li	Li	Li	Li	Li	Lu	Me	Me	Mu	Ov	Pa	Pa	Pa	Sk	Sm	So	So	So	So	Sp	St	St	St	St	Te	Te	Th	Ut	Wh

Mature sequence

Rno-Mir-154-P19_5p

mirBase accession

MIMAT0003176

Sequence

0- GGAGAAAUUAUCCUUGGUGUGUU -23

Get sequence

Proposed targets

microrna.org: MIMAT0003176
TargetScanVert: rno-miR-539-5p
miRDB: MIMAT0003176

Star sequence

Rno-Mir-154-P19_3p*

mirBase accession

MIMAT0017212

Sequence

40- CAUACAAGGGUAAUUUCUUUUC -62

Get sequence

Proposed targets

TargetScanVert: rno-miR-539-3p
miRDB: MIMAT0017212