Mir-154-P17

MirGeneDB ID

Rno-Mir-154-P17

Family name

MIR-154 (all species)

Seed

AUCGUAC

Species

Norway rat (Rattus norvegicus)

MiRBase ID

rno-mir-487b

Paralogues

Rno-Mir-154-P1 Rno-Mir-154-P2-v1 Rno-Mir-154-P2-v2 Rno-Mir-154-P3a-v1 Rno-Mir-154-P3a-v2 Rno-Mir-154-P4-o1 Rno-Mir-154-P5 Rno-Mir-154-P6 Rno-Mir-154-P7 Rno-Mir-154-P8 Rno-Mir-154-P9 Rno-Mir-154-P10 Rno-Mir-154-P12 Rno-Mir-154-P13 Rno-Mir-154-P14 Rno-Mir-154-P15 Rno-Mir-154-P18 Rno-Mir-154-P19 Rno-Mir-154-P20-v1 Rno-Mir-154-P20-v2 Rno-Mir-154-P21 Rno-Mir-154-P22 Rno-Mir-154-P26 Rno-Mir-154-P29-v1 Rno-Mir-154-P29-v2 Rno-Mir-154-P30 Rno-Mir-154-P34 Rno-Mir-154-P36

Orthologues

Bta-Mir-154-P17 Cfa-Mir-154-P17 Cpo-Mir-154-P17 Dno-Mir-154-P17 Ete-Mir-154-P17 Hsa-Mir-154-P17 Mml-Mir-154-P17 Mmu-Mir-154-P17 Ocu-Mir-154-P17

Node of Origin (locus)

Eutheria

Node of Origin (family)

Eutheria

Genome context
(rn6)

chr6: 133877137-133877194 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-154-P17)

Mir-154-P7 chr6: 133857715-133857772 [+] UCSC Ensembl
Mir-154-P13 chr6: 133858859-133858914 [+] UCSC Ensembl
Mir-154-P2-v1 chr6: 133859329-133859383 [+] UCSC Ensembl
Mir-154-P2-v2 chr6: 133859330-133859382 [+] UCSC Ensembl
Mir-154-P8 chr6: 133860500-133860556 [+] UCSC Ensembl
Mir-154-P3a-v2 chr6: 133861214-133861269 [+] UCSC Ensembl
Mir-154-P3a-v1 chr6: 133861214-133861269 [+] UCSC Ensembl
Mir-154-P26 chr6: 133861509-133861566 [+] UCSC Ensembl
Mir-154-P4-o1 chr6: 133862190-133862249 [+] UCSC Ensembl
Mir-154-P18 chr6: 133864385-133864440 [+] UCSC Ensembl
Mir-154-P29-v1 chr6: 133864729-133864785 [+] UCSC Ensembl
Mir-154-P29-v2 chr6: 133864730-133864784 [+] UCSC Ensembl
Mir-666 chr6: 133866541-133866601 [+] UCSC Ensembl
Mir-154-P22 chr6: 133866672-133866729 [+] UCSC Ensembl
Mir-154-P19 chr6: 133868298-133868357 [+] UCSC Ensembl
Mir-667 chr6: 133869584-133869647 [+] UCSC Ensembl
Mir-376-P4 chr6: 133872453-133872510 [+] UCSC Ensembl
Mir-376-P2 chr6: 133873110-133873167 [+] UCSC Ensembl
Mir-376-P1 chr6: 133873618-133873675 [+] UCSC Ensembl
Mir-154-P34 chr6: 133874161-133874223 [+] UCSC Ensembl
Mir-154-P9 chr6: 133876615-133876677 [+] UCSC Ensembl
Mir-154-P17 chr6: 133877137-133877194 [+] UCSC Ensembl
Mir-154-P21 chr6: 133877840-133877901 [+] UCSC Ensembl
Mir-544 chr6: 133879179-133879235 [+] UCSC Ensembl
Mir-154-P10 chr6: 133884190-133884247 [+] UCSC Ensembl
Mir-134 chr6: 133884554-133884614 [+] UCSC Ensembl
Mir-154-P15 chr6: 133885310-133885368 [+] UCSC Ensembl
Mir-154-P1 chr6: 133888600-133888657 [+] UCSC Ensembl
Mir-154-P20-v2 chr6: 133889296-133889351 [+] UCSC Ensembl
Mir-154-P20-v1 chr6: 133889297-133889350 [+] UCSC Ensembl
Mir-154-P6 chr6: 133890697-133890756 [+] UCSC Ensembl
Mir-541 chr6: 133892668-133892733 [+] UCSC Ensembl
Mir-154-P36 chr6: 133893432-133893485 [+] UCSC Ensembl
Mir-154-P14 chr6: 133893579-133893634 [+] UCSC Ensembl
Mir-154-P5 chr6: 133893706-133893761 [+] UCSC Ensembl
Mir-154-P12 chr6: 133894007-133894062 [+] UCSC Ensembl
Mir-3072 chr6: 133898823-133898879 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

CUUUCCAGGCCGAGCUUUGGUACUUGGAGAGUGGUUAUCCCUGUCCUCUUCGCUUCACUUAUGCCGAAUCGUACAGGGUCAUCCACUUUUUCAGUAUCAAGUGCACAGACUCUGCAGC

Get precursor sequence

Structure

        10          20        30        40        50        
CUUUCCAGGCCGAGCUU--|      UG        UUAU      CCUC    CUUCA 
                   UGGUACU  GAGAGUGG    CCCUGU    UUCG     C
                   ACUAUGA  UUUUCACC    GGGACA    AAGC     U
CGACGUCUCAGACACGUGA^      CU        UACU      UGCU    CGUAU 
      110       100        90        80        70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

Tissue expression

Ad	Ad	Br	Br	Br	Ce	Ce	Ce	Ce	Co	Co	Co	Co	Dr	Dr	Du	Du	Du	Du	He	He	Hi	Hi	Il	Il	Je	Je	Ki	Ki	Ki	Ki	Li	Li	Li	Li	Me	Me	Mu	Mu	Mu	Mu	Mu	Mu	Mu	Mu	Ov	Pa	Pa	St	St	St	Te	Ut	Wh	Br	Fa	He	Ki	La	Li	Li	Lu	Mu	Pa	Sk	Sm	Sp	St	Te	Th

Star sequence

Rno-Mir-154-P17_5p*

mirBase accession

MIMAT0017221

Sequence

0- GUGGUUAUCCCUGUCCUCUUCG -22

Get sequence

Proposed targets

TargetScanVert: rno-miR-487b-5p
miRDB: MIMAT0017221

Mature sequence

Rno-Mir-154-P17_3p

mirBase accession

MIMAT0003200

Sequence

36- AAUCGUACAGGGUCAUCCACUU -58

Get sequence

Proposed targets

microrna.org: MIMAT0003200
TargetScanVert: rno-miR-487b-3p
miRDB: MIMAT0003200