Mir-154-P17

MirGeneDB ID

Ocu-Mir-154-P17

Family name

MIR-154 (all species)

Seed

AUCGUAC

Species

Rabbit (Oryctolagus cuniculus)

MiRBase ID

ocu-mir-487b

Paralogues

Ocu-Mir-154-P1 Ocu-Mir-154-P2-v1 Ocu-Mir-154-P2-v2 Ocu-Mir-154-P3a-v1 Ocu-Mir-154-P3a-v2 Ocu-Mir-154-P4-o1 Ocu-Mir-154-P5 Ocu-Mir-154-P6 Ocu-Mir-154-P7 Ocu-Mir-154-P9 Ocu-Mir-154-P10 Ocu-Mir-154-P12 Ocu-Mir-154-P13 Ocu-Mir-154-P15 Ocu-Mir-154-P16 Ocu-Mir-154-P19 Ocu-Mir-154-P20-v1 Ocu-Mir-154-P20-v2 Ocu-Mir-154-P21 Ocu-Mir-154-P22 Ocu-Mir-154-P23 Ocu-Mir-154-P24 Ocu-Mir-154-P25 Ocu-Mir-154-P26 Ocu-Mir-154-P27 Ocu-Mir-154-P30 Ocu-Mir-154-P36

Orthologues

Bta-Mir-154-P17 Cfa-Mir-154-P17 Cpo-Mir-154-P17 Dno-Mir-154-P17 Ete-Mir-154-P17 Hsa-Mir-154-P17 Mml-Mir-154-P17 Mmu-Mir-154-P17 Rno-Mir-154-P17

Node of Origin (locus)

Eutheria

Node of Origin (family)

Eutheria

Genome context
(oryCun2_add)

chrUn0352: 137030-137087 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-154-P17)

Mir-154-P7 chrUn0352: 121687-121745 [+] UCSC Ensembl
Mir-154-P13 chrUn0352: 122887-122942 [+] UCSC Ensembl
Mir-154-P2-v1 chrUn0352: 123314-123368 [+] UCSC Ensembl
Mir-154-P2-v2 chrUn0352: 123315-123367 [+] UCSC Ensembl
Mir-154-P30 chrUn0352: 124893-124948 [+] UCSC Ensembl
Mir-154-P3a-v2 chrUn0352: 125054-125109 [+] UCSC Ensembl
Mir-154-P3a-v1 chrUn0352: 125054-125109 [+] UCSC Ensembl
Mir-154-P26 chrUn0352: 125317-125376 [+] UCSC Ensembl
Mir-154-P19 chrUn0352: 130083-130140 [+] UCSC Ensembl
Mir-376-P4 chrUn0352: 132903-132959 [+] UCSC Ensembl
Mir-376-P3 chrUn0352: 133217-133274 [+] UCSC Ensembl
Mir-154-P23 chrUn0352: 133369-133421 [+] UCSC Ensembl
Mir-376-P2 chrUn0352: 133511-133568 [+] UCSC Ensembl
Mir-376-P1 chrUn0352: 133845-133902 [+] UCSC Ensembl
Mir-154-P9 chrUn0352: 136582-136644 [+] UCSC Ensembl
Mir-154-P17 chrUn0352: 137030-137087 [+] UCSC Ensembl
Mir-154-P21 chrUn0352: 137513-137576 [+] UCSC Ensembl
Mir-154-P27 chrUn0352: 138028-138086 [+] UCSC Ensembl
Mir-154-P24 chrUn0352: 139340-139398 [+] UCSC Ensembl
Mir-154-P16 chrUn0352: 141248-141305 [+] UCSC Ensembl
Mir-154-P10 chrUn0352: 142718-142775 [+] UCSC Ensembl
Mir-134 chrUn0352: 143048-143107 [+] UCSC Ensembl
Mir-154-P15 chrUn0352: 143743-143801 [+] UCSC Ensembl
Mir-154-P1 chrUn0352: 147896-147953 [+] UCSC Ensembl
Mir-154-P20-v2 chrUn0352: 149011-149066 [+] UCSC Ensembl
Mir-154-P20-v1 chrUn0352: 149012-149065 [+] UCSC Ensembl
Mir-154-P6 chrUn0352: 150228-150287 [+] UCSC Ensembl
Mir-541 chrUn0352: 152092-152157 [+] UCSC Ensembl
Mir-154-P5 chrUn0352: 152953-153008 [+] UCSC Ensembl
Mir-154-P12 chrUn0352: 153189-153244 [+] UCSC Ensembl
Mir-154-P25 chrUn0352: 153728-153783 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

CUUUGCGUGCUAACCUUUGGUACUUGGGGAGUGGUUAUCCCUGUCCUGUUCGUUUUAUUCAUGUCGAAUCGUACAGGGUCAUCCACUUUUUCAGUAUCAAGAGCGCAGAUUCUGGAGC

Get precursor sequence

Structure

        10          20        30        40        50        
CUUUGCGUGCUAACCUU--|      UG        UUAU      CCU     UUUUA 
                   UGGUACU  GGGAGUGG    CCCUGU   GUUCG     U
                   ACUAUGA  UUUUCACC    GGGACA   UAAGC     U
CGAGGUCUUAGACGCGAGA^      CU        UACU      UGC     UGUAC 
      110       100        90        80        70        60