Mir-154-P23

MirGeneDB ID

Ocu-Mir-154-P23

Family name

MIR-154 (all species)

Seed

AUGUCUG

Species

Rabbit (Oryctolagus cuniculus)

MiRBase ID

ocu-mir-654

Paralogues

Ocu-Mir-154-P1 Ocu-Mir-154-P2-v1 Ocu-Mir-154-P2-v2 Ocu-Mir-154-P3a-v1 Ocu-Mir-154-P3a-v2 Ocu-Mir-154-P4-o1 Ocu-Mir-154-P5 Ocu-Mir-154-P6 Ocu-Mir-154-P7 Ocu-Mir-154-P9 Ocu-Mir-154-P10 Ocu-Mir-154-P12 Ocu-Mir-154-P13 Ocu-Mir-154-P15 Ocu-Mir-154-P16 Ocu-Mir-154-P17 Ocu-Mir-154-P19 Ocu-Mir-154-P20-v1 Ocu-Mir-154-P20-v2 Ocu-Mir-154-P21 Ocu-Mir-154-P22 Ocu-Mir-154-P24 Ocu-Mir-154-P25 Ocu-Mir-154-P26 Ocu-Mir-154-P27 Ocu-Mir-154-P30 Ocu-Mir-154-P36

Orthologues

Bta-Mir-154-P23 Cfa-Mir-154-P23 Cpo-Mir-154-P23 Dno-Mir-154-P23 Hsa-Mir-154-P23 Mml-Mir-154-P23

Node of Origin (locus)

Eutheria

Node of Origin (family)

Eutheria

Genome context
(oryCun2_add)

chrUn0352: 133369-133421 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-154-P23)

Mir-154-P7 chrUn0352: 121687-121745 [+] UCSC Ensembl
Mir-154-P13 chrUn0352: 122887-122942 [+] UCSC Ensembl
Mir-154-P2-v1 chrUn0352: 123314-123368 [+] UCSC Ensembl
Mir-154-P2-v2 chrUn0352: 123315-123367 [+] UCSC Ensembl
Mir-154-P30 chrUn0352: 124893-124948 [+] UCSC Ensembl
Mir-154-P3a-v2 chrUn0352: 125054-125109 [+] UCSC Ensembl
Mir-154-P3a-v1 chrUn0352: 125054-125109 [+] UCSC Ensembl
Mir-154-P26 chrUn0352: 125317-125376 [+] UCSC Ensembl
Mir-154-P19 chrUn0352: 130083-130140 [+] UCSC Ensembl
Mir-376-P4 chrUn0352: 132903-132959 [+] UCSC Ensembl
Mir-376-P3 chrUn0352: 133217-133274 [+] UCSC Ensembl
Mir-154-P23 chrUn0352: 133369-133421 [+] UCSC Ensembl
Mir-376-P2 chrUn0352: 133511-133568 [+] UCSC Ensembl
Mir-376-P1 chrUn0352: 133845-133902 [+] UCSC Ensembl
Mir-154-P9 chrUn0352: 136582-136644 [+] UCSC Ensembl
Mir-154-P17 chrUn0352: 137030-137087 [+] UCSC Ensembl
Mir-154-P21 chrUn0352: 137513-137576 [+] UCSC Ensembl
Mir-154-P27 chrUn0352: 138028-138086 [+] UCSC Ensembl
Mir-154-P24 chrUn0352: 139340-139398 [+] UCSC Ensembl
Mir-154-P16 chrUn0352: 141248-141305 [+] UCSC Ensembl
Mir-154-P10 chrUn0352: 142718-142775 [+] UCSC Ensembl
Mir-134 chrUn0352: 143048-143107 [+] UCSC Ensembl
Mir-154-P15 chrUn0352: 143743-143801 [+] UCSC Ensembl
Mir-154-P1 chrUn0352: 147896-147953 [+] UCSC Ensembl
Mir-154-P20-v2 chrUn0352: 149011-149066 [+] UCSC Ensembl
Mir-154-P20-v1 chrUn0352: 149012-149065 [+] UCSC Ensembl
Mir-154-P6 chrUn0352: 150228-150287 [+] UCSC Ensembl
Mir-541 chrUn0352: 152092-152157 [+] UCSC Ensembl
Mir-154-P5 chrUn0352: 152953-153008 [+] UCSC Ensembl
Mir-154-P12 chrUn0352: 153189-153244 [+] UCSC Ensembl
Mir-154-P25 chrUn0352: 153728-153783 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

AGGGCUCAGCCCCCAGGGAGAGUGGAAGGGUGGCGGCCGGGGACAUGUGCUCACUUGGCGCCAUAUGUCUGCCGACCGUCACCUUUCGGAGCCCCCUGUCGCCGAGGAGCGCC

Get precursor sequence

Structure

        10        20          30        40         50     
AGGGCUCAGCCCCCAGGGAGAGUG--            C   -|        CUCAC 
                          GAAGGGUGGCGG CGG GGACAUGUG     U
                          CUUUCCACUGCC GCC UCUGUAUAC     U
CCGCGAGGAGCCGCUGUCCCCCGAGG            A   G^        CGCGG 
 110       100        90        80        70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

He	Ki	Te	To	Wh

Star sequence

Ocu-Mir-154-P23_5p*

mirBase accession

MIMAT0048545

Sequence

0- UGGCGGCCGGGGACAUGUGC -20

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Mature sequence

Ocu-Mir-154-P23_3p

mirBase accession

MIMAT0048546

Sequence

33- UAUGUCUGCCGACCGUCACC -53

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