Mir-544

MirGeneDB ID

Ocu-Mir-544

Family name

MIR-544 (all species)

Species

Rabbit (Oryctolagus cuniculus)

MiRBase ID

Paralogues

Orthologues

Bta-Mir-544 Cfa-Mir-544-P1 Cfa-Mir-544-P2 Cja-Mir-544 Dno-Mir-544 Eca-Mir-544 Ete-Mir-544 Hsa-Mir-544 Laf-Mir-544 Mml-Mir-544 Mmr-Mir-544 Mmu-Mir-544 Pab-Mir-544 Rno-Mir-544

Node of Origin (locus)

Eutheria

Node of Origin (family)

Eutheria

Genome context
(oryCun2_add)

chrUn0352: 138609-138665 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-544)

Mir-154-P1 chrUn0352: 121687-121745 [+] UCSC Ensembl
Mir-154-P2-v2 chrUn0352: 122886-122943 [+] UCSC Ensembl
Mir-154-P2-v1 chrUn0352: 122887-122942 [+] UCSC Ensembl
Mir-154-P3-v1 chrUn0352: 123314-123368 [+] UCSC Ensembl
Mir-154-P3-v2 chrUn0352: 123315-123367 [+] UCSC Ensembl
Mir-154-P5 chrUn0352: 124893-124948 [+] UCSC Ensembl
Mir-154-P6a-v1 chrUn0352: 125054-125109 [+] UCSC Ensembl
Mir-154-P6a-v2 chrUn0352: 125054-125109 [+] UCSC Ensembl
Mir-154-P7 chrUn0352: 125317-125376 [+] UCSC Ensembl
Mir-154-P8-o1 chrUn0352: 126028-126087 [+] UCSC Ensembl
Mir-154-P12 chrUn0352: 130083-130140 [+] UCSC Ensembl
Mir-376-P2 chrUn0352: 132903-132959 [+] UCSC Ensembl
Mir-376-P3 chrUn0352: 133217-133274 [+] UCSC Ensembl
Mir-154-P14 chrUn0352: 133369-133421 [+] UCSC Ensembl
Mir-376-P4 chrUn0352: 133511-133568 [+] UCSC Ensembl
Mir-376-P5 chrUn0352: 133845-133902 [+] UCSC Ensembl
Mir-154-P17 chrUn0352: 136582-136644 [+] UCSC Ensembl
Mir-154-P18 chrUn0352: 137030-137087 [+] UCSC Ensembl
Mir-154-P19 chrUn0352: 137513-137576 [+] UCSC Ensembl
Mir-154-P20 chrUn0352: 138028-138086 [+] UCSC Ensembl
Mir-544 chrUn0352: 138609-138665 [+] UCSC Ensembl
Mir-154-P21 chrUn0352: 139340-139398 [+] UCSC Ensembl
Mir-154-P23 chrUn0352: 141248-141305 [+] UCSC Ensembl
Mir-154-P24 chrUn0352: 142718-142775 [+] UCSC Ensembl
Mir-134 chrUn0352: 143048-143107 [+] UCSC Ensembl
Mir-154-P25 chrUn0352: 143743-143801 [+] UCSC Ensembl
Mir-154-P26 chrUn0352: 147896-147953 [+] UCSC Ensembl
Mir-154-P28-v2 chrUn0352: 149011-149066 [+] UCSC Ensembl
Mir-154-P28-v1 chrUn0352: 149012-149065 [+] UCSC Ensembl
Mir-154-P29 chrUn0352: 150228-150287 [+] UCSC Ensembl
Mir-541 chrUn0352: 152092-152157 [+] UCSC Ensembl
Mir-154-P30 chrUn0352: 152734-152787 [+] UCSC Ensembl
Mir-154-P32 chrUn0352: 152953-153008 [+] UCSC Ensembl
Mir-154-P33 chrUn0352: 153189-153244 [+] UCSC Ensembl
Mir-154-P34 chrUn0352: 153728-153783 [+] UCSC Ensembl

Seed

CUUGGUA

Precursor
(pre-Mir +30nt flank)

AAUGCGGCUCAGAUGGUCAUCACCAAGGCAUCUUGGUAGAAAGCAGAUUCUGAUUCCGGGACCAAGAUUCUGCAUUUUUAGCAAGUUCUUGAGUGCUGCCGCAGCAGCUGGUCUGUG

Get precursor sequence

Structure

        10          20         30        40         50        
AAUGCGGCUCAGAUGGU--  U   -|    CAU    G      -     U   GAUUCC 
                   CA CAC CAAGG   CUUG UAGAAA GCAGA UCU      \
                   GU GUG GUUCU   GAAC AUUUUU CGUCU AGA      G
GUGUCUGGUCGACGACGCC  C   A^    U--    G      A     U   ACCAGG 
     110       100        90          80        70        60

Deep sequencing

3' NTU

Unknown

Motifs

CNNC at 3p(+17)

Tissue expression

He	Ki	Te	To	Wh

Mature sequence

Ocu-Mir-544_5p (predicted)

mirBase accession

None

Sequence

0- UCUUGGUAGAAAGCAGAUUCU -21

Get sequence

Star sequence

Ocu-Mir-544_3p* (predicted)

mirBase accession

None

Sequence

36- AUUCUGCAUUUUUAGCAAGUU -57

Get sequence