Mir-154-P5

MirGeneDB ID

Ocu-Mir-154-P5

Family name

MIR-154 (all species)

Seed

AUAAUAG

Species

Rabbit (Oryctolagus cuniculus)

MiRBase ID

ocu-mir-369

Paralogues

Ocu-Mir-154-P1 Ocu-Mir-154-P2-v1 Ocu-Mir-154-P2-v2 Ocu-Mir-154-P3a-v1 Ocu-Mir-154-P3a-v2 Ocu-Mir-154-P4-o1 Ocu-Mir-154-P6 Ocu-Mir-154-P7 Ocu-Mir-154-P9 Ocu-Mir-154-P10 Ocu-Mir-154-P12 Ocu-Mir-154-P13 Ocu-Mir-154-P15 Ocu-Mir-154-P16 Ocu-Mir-154-P17 Ocu-Mir-154-P19 Ocu-Mir-154-P20-v1 Ocu-Mir-154-P20-v2 Ocu-Mir-154-P21 Ocu-Mir-154-P22 Ocu-Mir-154-P23 Ocu-Mir-154-P24 Ocu-Mir-154-P25 Ocu-Mir-154-P26 Ocu-Mir-154-P27 Ocu-Mir-154-P30 Ocu-Mir-154-P36

Orthologues

Bta-Mir-154-P5 Cfa-Mir-154-P5 Cpo-Mir-154-P5 Dno-Mir-154-P5 Ete-Mir-154-P5 Hsa-Mir-154-P5 Mml-Mir-154-P5 Mmu-Mir-154-P5 Rno-Mir-154-P5

Node of Origin (locus)

Eutheria

Node of Origin (family)

Eutheria

Genome context
(oryCun2_add)

chrUn0352: 152953-153008 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-154-P5)

Mir-154-P7 chrUn0352: 121687-121745 [+] UCSC Ensembl
Mir-154-P13 chrUn0352: 122887-122942 [+] UCSC Ensembl
Mir-154-P2-v1 chrUn0352: 123314-123368 [+] UCSC Ensembl
Mir-154-P2-v2 chrUn0352: 123315-123367 [+] UCSC Ensembl
Mir-154-P30 chrUn0352: 124893-124948 [+] UCSC Ensembl
Mir-154-P3a-v2 chrUn0352: 125054-125109 [+] UCSC Ensembl
Mir-154-P3a-v1 chrUn0352: 125054-125109 [+] UCSC Ensembl
Mir-154-P26 chrUn0352: 125317-125376 [+] UCSC Ensembl
Mir-154-P19 chrUn0352: 130083-130140 [+] UCSC Ensembl
Mir-376-P4 chrUn0352: 132903-132959 [+] UCSC Ensembl
Mir-376-P3 chrUn0352: 133217-133274 [+] UCSC Ensembl
Mir-154-P23 chrUn0352: 133369-133421 [+] UCSC Ensembl
Mir-376-P2 chrUn0352: 133511-133568 [+] UCSC Ensembl
Mir-376-P1 chrUn0352: 133845-133902 [+] UCSC Ensembl
Mir-154-P9 chrUn0352: 136582-136644 [+] UCSC Ensembl
Mir-154-P17 chrUn0352: 137030-137087 [+] UCSC Ensembl
Mir-154-P21 chrUn0352: 137513-137576 [+] UCSC Ensembl
Mir-154-P27 chrUn0352: 138028-138086 [+] UCSC Ensembl
Mir-154-P24 chrUn0352: 139340-139398 [+] UCSC Ensembl
Mir-154-P16 chrUn0352: 141248-141305 [+] UCSC Ensembl
Mir-154-P10 chrUn0352: 142718-142775 [+] UCSC Ensembl
Mir-134 chrUn0352: 143048-143107 [+] UCSC Ensembl
Mir-154-P15 chrUn0352: 143743-143801 [+] UCSC Ensembl
Mir-154-P1 chrUn0352: 147896-147953 [+] UCSC Ensembl
Mir-154-P20-v2 chrUn0352: 149011-149066 [+] UCSC Ensembl
Mir-154-P20-v1 chrUn0352: 149012-149065 [+] UCSC Ensembl
Mir-154-P6 chrUn0352: 150228-150287 [+] UCSC Ensembl
Mir-541 chrUn0352: 152092-152157 [+] UCSC Ensembl
Mir-154-P5 chrUn0352: 152953-153008 [+] UCSC Ensembl
Mir-154-P12 chrUn0352: 153189-153244 [+] UCSC Ensembl
Mir-154-P25 chrUn0352: 153728-153783 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

CGGGCGCAGCCUCUCCGGGUACCUGAAGGGAGAUCGACCGUGUUCCAUUCGCUCCGCUGACUUCGAAUAAUAGAUGGUUGAUCUUUCCUCGGUAUCAAUUCUCACCCGGAGGGCAC

Get precursor sequence

Structure

        10           20        30        40        50       
CGGGCGCAGCCUCUCCG---|     U  A GG           GUUCC     CUCCG 
                    GGUACC GA G  AGAUCGACCGU     AUUCG     C
                    CUAUGG CU C  UCUAGUUGGUA     UAAGC     U
CACGGGAGGCCCACUCUUAA^     -  C UU           GAUAA     UUCAG 
    110       100         90        80        70        60

Deep sequencing

3' NTU

Unknown

Motifs

CNNC at 3p(+17)

Tissue expression

He	Ki	Te	To	Wh

Star sequence

Ocu-Mir-154-P5_5p* (predicted)

mirBase accession

MIMAT0048402

Sequence

0- AGAUCGACCGUGUUCCAUUCG -21

Get sequence

Mature sequence

Ocu-Mir-154-P5_3p (predicted)

mirBase accession

MIMAT0048403

Sequence

35- AAUAAUAGAUGGUUGAUCUUU -56

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