Mir-544-P1

MirGeneDB ID

Cfa-Mir-544-P1

Family name

MIR-544 (all species)

Species

Dog (Canis familiaris)

MiRBase ID

cfa-mir-544

Paralogues

Cfa-Mir-544-P2

Orthologues

Bta-Mir-544 Cja-Mir-544 Dno-Mir-544 Eca-Mir-544 Ete-Mir-544 Hsa-Mir-544 Laf-Mir-544 Mml-Mir-544 Mmr-Mir-544 Mmu-Mir-544 Ocu-Mir-544 Pab-Mir-544 Rno-Mir-544

Node of Origin (locus)

C. familiaris

Node of Origin (family)

Eutheria

Genome context
(canFam3_add)

chr8: 69277674-69277730 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-544-P1)

Mir-154-P1 chr8: 69253808-69253866 [+] UCSC Ensembl
Mir-154-P2-v2 chr8: 69255094-69255151 [+] UCSC Ensembl
Mir-154-P2-v1 chr8: 69255095-69255150 [+] UCSC Ensembl
Mir-154-P3-v1 chr8: 69255553-69255607 [+] UCSC Ensembl
Mir-154-P3-v2 chr8: 69255554-69255606 [+] UCSC Ensembl
Mir-154-P4 chr8: 69256764-69256820 [+] UCSC Ensembl
Mir-154-P5 chr8: 69257332-69257387 [+] UCSC Ensembl
Mir-154-P6a-v1 chr8: 69257494-69257549 [+] UCSC Ensembl
Mir-154-P6a-v2 chr8: 69257494-69257549 [+] UCSC Ensembl
Mir-154-P7 chr8: 69257795-69257852 [+] UCSC Ensembl
Mir-154-P8a chr8: 69258540-69258597 [+] UCSC Ensembl
Mir-154-P8b chr8: 69258856-69258913 [+] UCSC Ensembl
Mir-154-P9 chr8: 69261399-69261454 [+] UCSC Ensembl
Mir-154-P10 chr8: 69261834-69261893 [+] UCSC Ensembl
Mir-154-P11 chr8: 69263406-69263463 [+] UCSC Ensembl
Mir-154-P12 chr8: 69265169-69265226 [+] UCSC Ensembl
Mir-154-P13 chr8: 69266325-69266382 [+] UCSC Ensembl
Mir-154-P35 chr8: 69267179-69267234 [+] UCSC Ensembl
Mir-376-P1 chr8: 69269753-69269810 [+] UCSC Ensembl
Mir-376-P2 chr8: 69270115-69270172 [+] UCSC Ensembl
Mir-376-P3 chr8: 69270499-69270556 [+] UCSC Ensembl
Mir-154-P14 chr8: 69270653-69270709 [+] UCSC Ensembl
Mir-376-P4 chr8: 69270881-69270938 [+] UCSC Ensembl
Mir-376-P5 chr8: 69271259-69271316 [+] UCSC Ensembl
Mir-154-P15 chr8: 69271824-69271885 [+] UCSC Ensembl
Mir-154-P16 chr8: 69273238-69273297 [+] UCSC Ensembl
Mir-154-P17 chr8: 69274990-69275052 [+] UCSC Ensembl
Mir-154-P18 chr8: 69275495-69275554 [+] UCSC Ensembl
Mir-154-P19 chr8: 69276318-69276381 [+] UCSC Ensembl
Mir-154-P20 chr8: 69276881-69276939 [+] UCSC Ensembl
Mir-544-P1 chr8: 69277674-69277730 [+] UCSC Ensembl
Mir-154-P21 chr8: 69278524-69278583 [+] UCSC Ensembl
Mir-154-P22 chr8: 69280668-69280721 [+] UCSC Ensembl
Mir-154-P23 chr8: 69281090-69281147 [+] UCSC Ensembl
Mir-154-P24 chr8: 69283122-69283179 [+] UCSC Ensembl
Mir-134 chr8: 69283503-69283563 [+] UCSC Ensembl
Mir-154-P25 chr8: 69284239-69284297 [+] UCSC Ensembl
Mir-154-P6b chr8: 69285042-69285098 [+] UCSC Ensembl
Mir-154-P28 chr8: 69289429-69289482 [+] UCSC Ensembl
Mir-154-P29 chr8: 69290943-69291002 [+] UCSC Ensembl
Mir-154-P30 chr8: 69293782-69293835 [+] UCSC Ensembl
Mir-154-P32 chr8: 69294073-69294128 [+] UCSC Ensembl
Mir-154-P33 chr8: 69294377-69294432 [+] UCSC Ensembl
Mir-154-P6c chr8: 69294885-69294940 [+] UCSC Ensembl
Mir-154-P34 chr8: 69295123-69295178 [+] UCSC Ensembl

Seed

CUUGUUA

Precursor
(pre-Mir +30nt flank)

AAUGCCUCUAAGAUUUUCAUCACCUAGGGAUCUUGUUAAAAGGCAGAUUCUGAUUUAGGGACCAAGAUUCUGCAUUUUUAGCAAGUUCCCAAGUGAUGCUAGCGCUGCUGGUCGGUG

Get precursor sequence

Structure

        10          20        30        40         50        
AAUGCCUCUAAGAUUUU--|     CUA    U           -     U   GAUUUA 
                   CAUCAC   GGGA CUUGUUAAAAG GCAGA UCU      \
                   GUAGUG   CCCU GAACGAUUUUU CGUCU AGA      G
GUGGCUGGUCGUCGCGAUC^     AA-    U           A     U   ACCAGG 
     110       100         90        80        70        60

Deep sequencing

Go to detailed chart

3' NTU

Yes

Motifs

CNNC at 3p(+17)

Tissue expression

An	An	An	Bl	Ce	Co	He	Hi	Hi	Hy	Ki	Ki	Li	Lu	Ov	Sk	Te	Te

Mature sequence

Cfa-Mir-544-P1_5p

mirBase accession

None

Sequence

0- UCUUGUUAAAAGGCAGAUUCU -21

Get sequence

Star sequence

Cfa-Mir-544-P1_3p*

mirBase accession

MIMAT0009910

Sequence

36- AUUCUGCAUUUUUAGCAAGUU -57

Get sequence

Proposed targets

TargetScanVert: cfa-miR-544
miRDB: MIMAT0009910