MirGeneDB 3.0

47 microRNA genes with node of origin C. familiaris

						Sort by genome coordinates								Motifs
MirGeneDB ID ▲	MiRBase ID	Family	Seed	5p accession	3p accession	Chromosome	Start	End	Strand	Node of origin (locus)	Node of origin (family)	Iso­miR	3' NTU	UG	UGUG	CNNC
Cfa-Mir-147-P1 V	cfa-mir-147	MIR-147	UGUGCGG	None	MIMAT0009874	chr30	11800635	11800694	+	C. familiaris	Vertebrata	2	No			1
Cfa-Mir-147-P2 V	None	MIR-147	UGUGCGG	None	None	chr15	58855318	58855377	+	C. familiaris	Vertebrata	2	No			1
Cfa-Mir-430-P5d1	cfa-mir-371	MIR-430	CUCAAAA	MIMAT0007747	None	chr1	103606523	103606582	+	C. familiaris	Vertebrata		No
Cfa-Mir-430-P5d2	None	MIR-430	CUCAAAA	None	None	chr1	103406620	103406679	+	C. familiaris	Vertebrata		No
Cfa-Mir-430-P7d1	None	MIR-430	AAGUGCU	None	None	chr1	103606026	103606080	-	C. familiaris	Vertebrata		No			1
Cfa-Mir-430-P7d2	None	MIR-430	AAGUGCU	None	None	chr1	103406123	103406177	-	C. familiaris	Vertebrata		No			1
Cfa-Mir-506-P3a	cfa-mir-508b	MIR-506	CUGUCAC	None	MIMAT0034425	chrX	115658609	115658666	-	C. familiaris	Eutheria		No	1
Cfa-Mir-506-P3b	cfa-mir-508a	MIR-506	CUGUCAC	MIMAT0034419	None	chrX	115658398	115658456	-	C. familiaris	Eutheria		No	1
Cfa-Mir-544-P1	cfa-mir-544	MIR-544	CUUGUUA	None	MIMAT0009910	chr8	69277674	69277730	+	C. familiaris	Eutheria		Yes			1
Cfa-Mir-544-P2	None	MIR-544	CUUGUUA	None	None	chr12	49638411	49638468	-	C. familiaris	Eutheria		No	1		1
Cfa-Mir-1838	cfa-mir-1838	MIR-1838	CACCAGC	MIMAT0006644	None	chr21	20592019	20592076	+	C. familiaris	C. familiaris		No		1	1
Cfa-Mir-1840	cfa-mir-1840	MIR-1840	GUUAGGG	None	MIMAT0006679	chr37	25734791	25734851	+	C. familiaris	C. familiaris		Yes			1
Cfa-Mir-1844	cfa-mir-1844	MIR-1844	GGACUAC	MIMAT0006740	None	chr9	32760904	32760963	+	C. familiaris	C. familiaris		No
Cfa-Mir-8859-P1	cfa-mir-8859b	MIR-8859	CCGCGCC	None	MIMAT0034358	chr18	46690581	46690638	-	C. familiaris	C. familiaris		No			1
Cfa-Mir-8859-P2	cfa-mir-8859a	MIR-8859	GGAUCGG	None	MIMAT0034354	chr18	46690410	46690471	-	C. familiaris	C. familiaris		No			1
Cfa-Mir-8902	cfa-mir-8902	MIR-8902	AUCCAUU	MIMAT0034412	None	chr4	50474028	50474084	+	C. familiaris	C. familiaris		Yes	1		1
Cfa-Mir-8908-P1a1	cfa-mir-8908a-1	MIR-8908	AUUAGGA	MIMAT0034428	MIMAT0034429	chrX	114689813	114689872	-	C. familiaris	C. familiaris		No
Cfa-Mir-8908-P1a2	cfa-mir-8908a-3	MIR-8908	AUUAGGA	MIMAT0034428	MIMAT0034429	chrX	114684100	114684159	-	C. familiaris	C. familiaris		No	1
Cfa-Mir-8908-P1b	cfa-mir-8908a-2	MIR-8908	AUUAGGA	None	MIMAT0034429	chrX	114687030	114687089	-	C. familiaris	C. familiaris		No
Cfa-Mir-8908-P1c	cfa-mir-8908a-4	MIR-8908	AUUAGGA	MIMAT0034428	MIMAT0034429	chrX	114680911	114680970	-	C. familiaris	C. familiaris		No	1
Cfa-Mir-8908-P1d	None	MIR-8908	UUAGGAC	None	None	chrUn_JH373668	22740	22799	+	C. familiaris	C. familiaris		Unknown	1
Cfa-Mir-8908-P2	cfa-mir-8908b	MIR-8908	AUUCAGG	None	MIMAT0034415	chrX	114678505	114678561	-	C. familiaris	C. familiaris		No	1		1
Cfa-Mir-8908-P3	cfa-mir-8908c	MIR-8908	AUUAGCA	None	MIMAT0034433	chrX	114675836	114675892	-	C. familiaris	C. familiaris		No	1		1
Cfa-Mir-8908-P4a1	cfa-mir-8908d-1	MIR-8908	UUAGCGC	None	MIMAT0034420	chrX	114688877	114688935	-	C. familiaris	C. familiaris		No
Cfa-Mir-8908-P4a2	cfa-mir-8908d-2	MIR-8908	UUAGCGC	None	MIMAT0034420	chrX	114679976	114680034	-	C. familiaris	C. familiaris		No
Cfa-Mir-8908-P4b	cfa-mir-8908d-3	MIR-8908	UAGCGCC	None	MIMAT0034420	chrX	114686169	114686227	-	C. familiaris	C. familiaris		No
Cfa-Mir-8908-P4c	None	MIR-8908	UAGCGCC	None	None	chrUn_JH373668	23687	23747	+	C. familiaris	C. familiaris		No			1
Cfa-Mir-8908-P5	cfa-mir-8908e	MIR-8908	GCAUAGG	MIMAT0034426	None	chrX	114676848	114676903	-	C. familiaris	C. familiaris		No	1		1
Cfa-Mir-8908-P6	cfa-mir-8908f	MIR-8908	AGUGACU	MIMAT0034418	None	chrX	114717103	114717160	-	C. familiaris	C. familiaris		No	1		1
Cfa-Mir-8908-P7	None	MIR-8908	UUAGCAU	None	None	chrUn_JH373668	10366	10422	+	C. familiaris	C. familiaris		No	1		1
Cfa-Mir-8908-P8	None	MIR-8908	AUCCAGA	None	None	chrUn_JH373668	13007	13063	+	C. familiaris	C. familiaris		No			1
Cfa-Novel-1	None	CFA-NOVEL-1	CCAGGGC	None	None	chr10	16859592	16859655	-	C. familiaris	C. familiaris		No
Cfa-Novel-2	None	CFA-NOVEL-2	CUCCAUU	None	None	chr11	63290160	63290220	+	C. familiaris	C. familiaris		No
Cfa-Novel-3	None	CFA-NOVEL-3	GGGAUCU	None	None	chr15	23529219	23529285	-	C. familiaris	C. familiaris		No
Cfa-Novel-4	None	CFA-NOVEL-4	CAUUCCC	None	None	chr16	20758531	20758592	-	C. familiaris	C. familiaris		No
Cfa-Novel-5	None	CFA-NOVEL-5	UCAGUCU	None	None	chr24	22892649	22892709	-	C. familiaris	C. familiaris		No			1
Cfa-Novel-6	None	CFA-NOVEL-6	CUGAGAG	None	None	chr3	15387060	15387122	+	C. familiaris	C. familiaris		No			1
Cfa-Novel-7	None	CFA-NOVEL-7	UCAGAGC	None	None	chr3	35437742	35437806	+	C. familiaris	C. familiaris		No	1
Cfa-Novel-8	None	CFA-NOVEL-8	AUCUUGA	None	None	chr3	89188779	89188838	-	C. familiaris	C. familiaris		No			1
Cfa-Novel-9	None	CFA-NOVEL-9	GAGCAUU	None	None	chr1	71774336	71774393	-	C. familiaris	C. familiaris		Yes
Cfa-Novel-10	None	CFA-NOVEL-10	AACCAGG	None	None	chr5	15196614	15196677	+	C. familiaris	C. familiaris		No			1
Cfa-Novel-11	None	CFA-NOVEL-11	GGCAGCA	None	None	chr6	12879003	12879059	-	C. familiaris	C. familiaris		Yes
Cfa-Novel-12	None	CFA-NOVEL-12	ACUGGAG	None	None	chr7	449942	450014	+	C. familiaris	C. familiaris		No			1
Cfa-Novel-13	None	CFA-NOVEL-13	UUCUCAU	None	None	chrX	13777803	13777884	+	C. familiaris	C. familiaris		No
Cfa-Novel-14	None	CFA-NOVEL-14	ACAGAGA	None	None	chrX	55489338	55489394	+	C. familiaris	C. familiaris		No	1
Cfa-Novel-15	None	CFA-NOVEL-15	CCAGCAG	None	None	chrX	32945420	32945483	-	C. familiaris	C. familiaris		No			1
Cfa-Novel-16	None	CFA-NOVEL-16	ACGUUGG	None	None	chrX	37879009	37879064	-	C. familiaris	C. familiaris		No

(red - mature/co-mature, blue - star)

Download sequences for: precursor | 5p | 3p | mature | star | mature/star | loop | extend_pre | all