| MirGeneDB ID | Cfa-Novel-3 |
|---|
| Family name |
CFA-NOVEL-3 (all species) |
|---|
| Species |
Dog (Canis familiaris) |
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| MiRBase ID |
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| Paralogues |
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| Orthologues |
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| Node of Origin (locus) |
C. familiaris
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| Node of Origin (family) |
C. familiaris
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Genome context
(canFam3_add) |
chr15: 23529219-23529285 [-]
UCSC
Ensembl
|
|---|
| Seed |
GGGAUCU |
|---|
Precursor
(pre-Mir +30nt flank) |
CCUACUGGCUCAGCUUUCCUCUAAAUUAUUUGGGAUCUCAGGGUAAAGCUGCAAUUUAAAGCAUGUAGUUGUCAGCUGGACCUUGAAUAUCCUAUAUAAUCUUGGAUGCUUUAUAUAAGGAGUCAAA
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
CCUACUGGCUCAGCUUUCC-- - U C-| AA CAAUUUAAAG
UCUAA AUUAU UGGGAU UCAGGGU AGCUG \
AGGUU UAAUA AUCCUA AGUUCCA UCGAC C
AAACUGAGGAAUAUAUUUCGU C U UA^ GG UGUUGAUGUA
120 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | No |
|---|
Tissue expression
|
| An |
An |
An |
Bl |
Ce |
Co |
He |
Hi |
Hi |
Hy |
Ki |
Ki |
Li |
Lu |
Ov |
Sk |
Te |
Te |
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| Mature sequence |
Cfa-Novel-3_5p |
| mirBase accession | None |
|---|
| Sequence |
0- UGGGAUCUCAGGGUAAAGCUG -21
Get sequence
|
|---|
| Co-mature sequence |
Cfa-Novel-3_3p |
| mirBase accession | None |
|---|
| Sequence |
44- GCUGGACCUUGAAUAUCCUAUAU -67
Get sequence
|
|---|
