| MirGeneDB ID | Cfa-Novel-10 |
|---|
| Family name |
CFA-NOVEL-10 (all species) |
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| Species |
Dog (Canis familiaris) |
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| MiRBase ID |
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| Paralogues |
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| Orthologues |
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| Node of Origin (locus) |
C. familiaris
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| Node of Origin (family) |
C. familiaris
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Genome context
(canFam3_add) |
chr5: 15196614-15196677 [+]
UCSC
Ensembl
|
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| Seed |
AACCAGG |
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Precursor
(pre-Mir +30nt flank) |
ACAUCCCAUCUGGGAGAGGCGUGGCUGUCCUAACCAGGAACACCCCAUGAUUCCCAGUUGCCUUUGGUUCUGCUCACGGGAGUUCUUGGUUUCAGCCAUCCUAGACAUCCCCAUCUACAAGAGU
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
ACAUCCCAUCUGGGAGA------| C UCCU AC A UUCCCAGUUGC
GG GUGGCUG AACCAGGAAC CCC UGA \
CC UACCGAC UUGGUUCUUG GGG ACU C
UGAGAACAUCUACCCCUACAGAU^ - U--- A- C CGUCUUGGUUU
120 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
No
|
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
|
| An |
An |
An |
Bl |
Ce |
Co |
He |
Hi |
Hi |
Hy |
Ki |
Ki |
Li |
Lu |
Ov |
Sk |
Te |
Te |
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| Mature sequence |
Cfa-Novel-10_5p |
| mirBase accession | None |
|---|
| Sequence |
0- UAACCAGGAACACCCCAUGAUUCC -24
Get sequence
|
|---|
| Co-mature sequence |
Cfa-Novel-10_3p |
| mirBase accession | None |
|---|
| Sequence |
41- GCUCACGGGAGUUCUUGGUUUCA -64
Get sequence
|
|---|
