| MirGeneDB ID | Cfa-Novel-11 |
|---|
| Family name |
CFA-NOVEL-11 (all species) |
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| Species |
Dog (Canis familiaris) |
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| MiRBase ID |
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| Paralogues |
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| Orthologues |
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| Node of Origin (locus) |
C. familiaris
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| Node of Origin (family) |
C. familiaris
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Genome context
(canFam3_add) |
chr6: 12879003-12879059 [-]
UCSC
Ensembl
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| Seed |
GGCAGCA |
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Precursor
(pre-Mir +30nt flank) |
CACCCUCUGAGGCCCAUCUGGGAGCCCAGCUCACCUGGCAUCUUGCUGUCGUCCUUCUCUUCAGAUGGCAGCAUGAUGCCAGGGCAGCUGGGUACCAGGCACAGCCCUCUCCGUGGA
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
CACCCUCUGAGGCCCAU--| GA CA U CUUC
CUGG GCCCAGCU CCUGGCAUC UGCUGUCGUC U
GACC UGGGUCGA GGACCGUAG ACGACGGUAG C
AGGUGCCUCUCCCGACACG^ A- CG U ACUU
110 100 90 80 70 60 |
|---|
| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
Yes
|
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| Motifs | No |
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Tissue expression
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| An |
An |
An |
Bl |
Ce |
Co |
He |
Hi |
Hi |
Hy |
Ki |
Ki |
Li |
Lu |
Ov |
Sk |
Te |
Te |
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| Star sequence |
Cfa-Novel-11_5p* |
| mirBase accession | None |
|---|
| Sequence |
0- UCACCUGGCAUCUUGCUGUCGUC -23
Get sequence
|
|---|
| Mature sequence |
Cfa-Novel-11_3p |
| mirBase accession | None |
|---|
| Sequence |
35- UGGCAGCAUGAUGCCAGGGCAG -57
Get sequence
|
|---|
