MirGeneDB 3.0
MirGeneDB ID

Cfa-Mir-147-P1

Family name MIR-147 (all species)
Species Dog (Canis familiaris)
MiRBase ID cfa-mir-147
Paralogues Cfa-Mir-147-P2-v1 
Orthologues Bta-Mir-147  Cja-Mir-147  Cli-Mir-147  Cmi-Mir-147  Eca-Mir-147  Gga-Mir-147  Lch-Mir-147  Mdo-Mir-147  Mml-Mir-147  Mmr-Mir-147  Mmu-Mir-147  Neu-Mir-147  Oan-Mir-147  Ocu-Mir-147  Pab-Mir-147  Pma-Mir-147  Sha-Mir-147  Spt-Mir-147  Tgu-Mir-147  Tni-Mir-147 
Node of Origin (locus) C. familiaris
Node of Origin (family) Vertebrata
Genome context
(canFam3_add)		 chr30: 11800635-11800694 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-147-P1-v1)		 Mir-147-P1-v1 chr30: 11800635-11800694 [+] UCSC Ensembl
Mir-147-P1-v2 chr30: 11800636-11800693 [+] UCSC Ensembl
Variant

Cfa-Mir-147-P1-v1
Seed UGUGCGG
Precursor
(pre-Mir +30nt flank)		 
CUUUCUUUCAAAGAGUACUCUAUGAAUCUAGUGGAAACAUUGCUGCACAAACUAGAUUAUGGAUACCAGUGUGCGGAAAUGCUUCUGCUACAUUUUUAGGGCUUGACUACAUUUUCGGAC
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Structure
        10          20        30        40        50         
CUUUCUUUCAAAGAGUA--|    U    C   UG   A    G       AACUAGAUU 
                   CUCUA GAAU UAG  GAA CAUU CUGCACA         A
                   GGGAU UUUA AUC  CUU GUAA GGCGUGU         U
CAGGCUUUUACAUCAGUUC^    U    C   GU   C    A       GACCAUAGG 
.       110       100        90        80        70        60
Deep sequencing
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CommentAlthough there are three potential precursor sequences in the assembled dog genome, one one of them is supported by read data for both the 5p and 3p arm so only one copy of Mir-147 is annotated here.
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
An An An Bl Ce Co He Hi Hi Hy Ki Ki Li Lu Ov Sk Te Te
Star sequence

Cfa-Mir-147-P1-v1_5p*
mirBase accessionNone
Sequence 
0- GUGGAAACAUUGCUGCACAAACU -23
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Mature sequence

Cfa-Mir-147-P1-v1_3p
mirBase accessionMIMAT0009874
Sequence 
38- GUGUGCGGAAAUGCUUCUGCUA -60
Get sequence
Proposed targets TargetScanVert: cfa-miR-147
miRDB: MIMAT0009874
Variant

Cfa-Mir-147-P1-v2
Seed GUGUGCG
Precursor
(pre-Mir +30nt flank)		 
UUUCUUUCAAAGAGUACUCUAUGAAUCUAGUGGAAACAUUGCUGCACAAACUAGAUUAUGGAUACCAGUGUGCGGAAAUGCUUCUGCUACAUUUUUAGGGCUUGACUACAUUUUCGGA
Get precursor sequence
Structure
        10          20        30        40        50        
UUUCUUUCAAAGAGUAC--|   U    C   UG   A    G       AACUAGAUU 
                   UCUA GAAU UAG  GAA CAUU CUGCACA         A
                   GGAU UUUA AUC  CUU GUAA GGCGUGU         U
AGGCUUUUACAUCAGUUCG^   U    C   GU   C    A       GACCAUAGG 
      110       100        90        80        70        60
Deep sequencing
Go to detailed chart
CommentAlthough there are three potential precursor sequences in the assembled dog genome, one one of them is supported by read data for both the 5p and 3p arm so only one copy of Mir-147 is annotated here.
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
An An An Bl Ce Co He Hi Hi Hy Ki Ki Li Lu Ov Sk Te Te
Star sequence

Cfa-Mir-147-P1-v2_5p*
mirBase accessionNone
Sequence 
0- UGGAAACAUUGCUGCACAAACU -22
Get sequence
Mature sequence

Cfa-Mir-147-P1-v2_3p
mirBase accessionMIMAT0009874
Sequence 
36- AGUGUGCGGAAAUGCUUCUGCU -58
Get sequence
Proposed targets TargetScanVert: cfa-miR-147
miRDB: MIMAT0009874