| MirGeneDB ID | Lch-Mir-147 |
|---|---|
| Family name | MIR-147 (all species) |
| Species | Coelacanth (Latimeria chalumnae) |
| MiRBase ID | |
| Paralogues | |
| Orthologues | Aca-Mir-147-v1 Ami-Mir-147-v1 Bta-Mir-147 Cfa-Mir-147-P1-v1 Cfa-Mir-147-P2-v1 Cja-Mir-147 Cli-Mir-147 Cmi-Mir-147 Cpi-Mir-147-v1 Cpo-Mir-147-v1 Dno-Mir-147-v1 Eca-Mir-147 Gga-Mir-147 Gja-Mir-147-P3a-v1 Gja-Mir-147-P3b-v1 Hsa-Mir-147-v1 Laf-Mir-147-P4 Laf-Mir-147-P5 Loc-Mir-147-v1 Mal-Mir-147-v1 Mdo-Mir-147 Mml-Mir-147 Mmr-Mir-147 Mmu-Mir-147 Neu-Mir-147 Oan-Mir-147 Ocu-Mir-147 Pab-Mir-147 Pbv-Mir-147-v1 Pma-Mir-147 Rno-Mir-147-v1 Sha-Mir-147 Spt-Mir-147 Tgu-Mir-147 Tni-Mir-147 |
| Node of Origin (locus) | Vertebrata |
| Node of Origin (family) | Vertebrata |
| Genome context (LatCha1_add) |
JH127003.1: 1293927-1293988 [+] Ensembl |
| Seed | UGUGCGG |
| Precursor (pre-Mir +30nt flank) |
AUUCCUGACUGUCUGCAGCCUAUGAAUCUAGCGGAAUCAUUUCUGCACAAACUCGACUAUUUGCAAAACAGUGUGCGGAAGUGCUUCUGCUACAUUUUUAGGGUUUGAUCACAAGUGUGUGCGet precursor sequence |
| Structure | 10 20 30 40 50 60 AUUCCUGACUGUCUGCAG--| U C U AACUCGACUA CCUA GAAU UAGCGGAA CAUUUCUGCACA U GGAU UUUA AUCGUCUU GUGAAGGCGUGU U CGUGUGUGAACACUAGUUUG^ U C C GACAAAACGU 120 110 100 90 80 70 |
| Deep sequencing | |
| 3' NTU | Unknown |
| Motifs | No |
| Star sequence | Lch-Mir-147_5p* (predicted) |
| mirBase accession | None |
| Sequence |
0- GCGGAAUCAUUUCUGCACAAACU -23
Get sequence
|
| Mature sequence | Lch-Mir-147_3p (predicted) |
| mirBase accession | None |
| Sequence |
40- GUGUGCGGAAGUGCUUCUGCUA -62
Get sequence
|
