MirGeneDB 2.1

MirGeneDB ID

Lch-Mir-147

Family name MIR-147 (all species)
Seed UGUGCGG
Species Coelacanth (Latimeria chalumnae)
MiRBase ID
Paralogues
Orthologues Aca-Mir-147-v1  Aca-Mir-147-v2  Ami-Mir-147-v1  Ami-Mir-147-v2  Bta-Mir-147  Cfa-Mir-147-P1-v1  Cfa-Mir-147-P1-v2  Cfa-Mir-147-P2-v1  Cfa-Mir-147-P2-v2  Cli-Mir-147  Cmi-Mir-147  Cpi-Mir-147-v1  Cpi-Mir-147-v2  Cpo-Mir-147-v1  Cpo-Mir-147-v2  Dno-Mir-147-v1  Dno-Mir-147-v2  Gga-Mir-147  Gja-Mir-147-P3a-v1  Gja-Mir-147-P3a-v2  Gja-Mir-147-P3b-v1  Gja-Mir-147-P3b-v2  Hsa-Mir-147-v1  Hsa-Mir-147-v2  Loc-Mir-147-v1  Loc-Mir-147-v2  Mal-Mir-147-v1  Mal-Mir-147-v2  Mdo-Mir-147  Mml-Mir-147  Mmu-Mir-147-v1  Mmu-Mir-147-v2  Oan-Mir-147  Ocu-Mir-147  Pbv-Mir-147-v1  Pbv-Mir-147-v2  Pma-Mir-147  Rno-Mir-147-v1  Rno-Mir-147-v2  Spt-Mir-147  Tgu-Mir-147  Tni-Mir-147 
Node of Origin (locus) Vertebrata
Node of Origin (family) Vertebrata
Genome context
(LatCha1_add)
JH127003.1: 1293927-1293988 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
AUUCCUGACUGUCUGCAGCCUAUGAAUCUAGCGGAAUCAUUUCUGCACAAACUCGACUAUUUGCAAAACAGUGUGCGGAAGUGCUUCUGCUACAUUUUUAGGGUUUGAUCACAAGUGUGUGC
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Structure
        10          20        30        40        50        60
AUUCCUGACUGUCUGCAG--|   U    C        U            AACUCGACUA 
                    CCUA GAAU UAGCGGAA CAUUUCUGCACA          U
                    GGAU UUUA AUCGUCUU GUGAAGGCGUGU          U
CGUGUGUGAACACUAGUUUG^   U    C        C            GACAAAACGU 
120       110       100        90        80        70
Deep sequencing
3' NTU Unknown
MotifsNo
Star sequence

Lch-Mir-147_5p* (predicted)

mirBase accessionNone
Sequence
0- GCGGAAUCAUUUCUGCACAAACU -23
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Mature sequence

Lch-Mir-147_3p (predicted)

mirBase accessionNone
Sequence
40- GUGUGCGGAAGUGCUUCUGCUA -62
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