MirGeneDB 2.1
MirGeneDB ID

Pma-Mir-147

Family name MIR-147 (all species)
Seed UGUGCGG
Species Sea Lamprey (Petromyzon marinus)
MiRBase ID pma-mir-147
Paralogues
Orthologues Aca-Mir-147-v1  Aca-Mir-147-v2  Ami-Mir-147-v1  Ami-Mir-147-v2  Bta-Mir-147  Cfa-Mir-147-P1-v1  Cfa-Mir-147-P1-v2  Cfa-Mir-147-P2-v1  Cfa-Mir-147-P2-v2  Cli-Mir-147  Cmi-Mir-147  Cpi-Mir-147-v1  Cpi-Mir-147-v2  Cpo-Mir-147-v1  Cpo-Mir-147-v2  Dno-Mir-147-v1  Dno-Mir-147-v2  Gga-Mir-147  Gja-Mir-147-P3a-v1  Gja-Mir-147-P3a-v2  Gja-Mir-147-P3b-v1  Gja-Mir-147-P3b-v2  Hsa-Mir-147-v1  Hsa-Mir-147-v2  Lch-Mir-147  Loc-Mir-147-v1  Loc-Mir-147-v2  Mal-Mir-147-v1  Mal-Mir-147-v2  Mdo-Mir-147  Mml-Mir-147  Mmu-Mir-147-v1  Mmu-Mir-147-v2  Oan-Mir-147  Ocu-Mir-147  Pbv-Mir-147-v1  Pbv-Mir-147-v2  Rno-Mir-147-v1  Rno-Mir-147-v2  Spt-Mir-147  Tgu-Mir-147  Tni-Mir-147 
Node of Origin (locus) Vertebrata
Node of Origin (family) Vertebrata
Genome context
(GCF_010993605.1_kPetMar1.pri_genomic)		 NC_046125.1: 6551863-6551929 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CCCGGCCGGCCCCGCAUCCCCAGUGAGAUUAGCUGAAUCAAUUCCGCUCAGACUCGUGUGAGUUUCGACUGCGAGUGUGCGGAUUUGCUUCUGCCAAUCUCCUCGGGGCAGUUCUUCAGCGGUGAGC
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Structure
        10          20         30        40        50        60    
CCCGGCCGGCCCCGCAU--    -| U      A  U   U   U     UC G    GUGUGAGU 
                   CCCC AG GAGAUU GC GAA CAA UCCGC  A ACUC        \
                   GGGG UC CUCUAA CG CUU GUU AGGCG  U UGAG        U
CGAGUGGCGACUUCUUGAC    C^ -      C  U   C   U     -- G    CGUCAGCU 
     120       110        100        90        80          70
Deep sequencing
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CommentNot in assembly but in trace archives.
3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
-   +
Br Gi Gu He Ki La Li Mo Mu Sk
Star sequence

Pma-Mir-147_5p* (predicted)
mirBase accessionNone
Sequence 
0- AGCUGAAUCAAUUCCGCUCAGACUC -25
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Mature sequence

Pma-Mir-147_3p
mirBase accessionMIMAT0019480
Sequence 
44- GUGUGCGGAUUUGCUUCUGCCAA -67
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