Mir-147

MirGeneDB ID

Gga-Mir-147

Family name

MIR-147 (all species)

Seed

UGUGCGG

Species

Chicken (Gallus gallus)

MiRBase ID

gga-mir-147

Paralogues

Orthologues

Aca-Mir-147-v1 Aca-Mir-147-v2 Ami-Mir-147-v1 Ami-Mir-147-v2 Bta-Mir-147 Cfa-Mir-147-P1-v1 Cfa-Mir-147-P1-v2 Cfa-Mir-147-P2-v1 Cfa-Mir-147-P2-v2 Cli-Mir-147 Cmi-Mir-147 Cpi-Mir-147-v1 Cpi-Mir-147-v2 Cpo-Mir-147-v1 Cpo-Mir-147-v2 Dno-Mir-147-v1 Dno-Mir-147-v2 Gja-Mir-147-P3a-v1 Gja-Mir-147-P3a-v2 Gja-Mir-147-P3b-v1 Gja-Mir-147-P3b-v2 Hsa-Mir-147-v1 Hsa-Mir-147-v2 Lch-Mir-147 Loc-Mir-147-v1 Loc-Mir-147-v2 Mal-Mir-147-v1 Mal-Mir-147-v2 Mdo-Mir-147 Mml-Mir-147 Mmu-Mir-147-v1 Mmu-Mir-147-v2 Oan-Mir-147 Ocu-Mir-147 Pbv-Mir-147-v1 Pbv-Mir-147-v2 Pma-Mir-147 Rno-Mir-147-v1 Rno-Mir-147-v2 Spt-Mir-147 Tgu-Mir-147 Tni-Mir-147

Node of Origin (locus)

Vertebrata

Node of Origin (family)

Vertebrata

Genome context
(Gallus_gallus.GRCg6a)

10: 11118953-11119012 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

UGUUGCCUCUAAAGGUACUCUAUGAAUCUAGUGGAAUCACUUCUGCACAAACUUGACUACUGAAAUCAGUGUGCGGAAAUGCUUCUGCUACAUUUUUAGGGUCUCCCUCCAUUUUUUGGG

Get precursor sequence

Structure

        10          20        30        40        50         
UGUUGCCUCUAAAGGUA--|    U    C   UG   U  C         AACUUGACU 
                   CUCUA GAAU UAG  GAA CA UUCUGCACA         A
                   GGGAU UUUA AUC  CUU GU AAGGCGUGU         C
GGGUUUUUUACCUCCCUCU^    U    C   GU   C  A         GACUAAAGU 
.       110       100        90        80        70        60

Deep sequencing

Go to detailed chart

Comment

There is a second Drosha cut -2 on the 5p arm.

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Ad	Ad	Ad	Br	Br	Ce	Ce	Ce	Ce	Ch	He	He	Hy	Hy	Ki	Ki	Li	Li	Lu	Lu	Ov	Pr	Pr	Sc	Sc	Sp	Sp	Te

Star sequence

Gga-Mir-147_5p*

mirBase accession

None

Sequence

0- GUGGAAUCACUUCUGCACAAACU -23

Get sequence

Mature sequence

Gga-Mir-147_3p

mirBase accession

MIMAT0003352

Sequence

38- GUGUGCGGAAAUGCUUCUGCUA -60

Get sequence

Proposed targets

TargetScanVert: gga-miR-147
miRDB: MIMAT0003352