MirGeneDB ID | Gja-Mir-147-P3a-v1 |
Family name |
MIR-147 (all species) |
Seed |
UGUGCGG |
Species |
Schlegels Japanese gecko (Gekko japonicus) |
MiRBase ID |
|
Paralogues |
Gja-Mir-147-P3a-v2
Gja-Mir-147-P3b-v1
Gja-Mir-147-P3b-v2
|
Orthologues |
Bta-Mir-147
Cli-Mir-147
Cmi-Mir-147
Gga-Mir-147
Lch-Mir-147
Mdo-Mir-147
Mml-Mir-147
Oan-Mir-147
Ocu-Mir-147
Pma-Mir-147
Spt-Mir-147
Tgu-Mir-147
Tni-Mir-147
|
Node of Origin (locus) |
G. japonicus
|
Node of Origin (family) |
Vertebrata
|
Genome context (GCF_001447785.1_Gekko_japonicus) |
NW_015177031.1: 504424-504483 [+]
|
Precursor (pre-Mir +30nt flank) |
AGUCUUUCCAAAUAACACUCUAUGAAUCUAGUGGAAUCAUUUCUGCACAAACUAGAGGAUUGAAACCAGUGUGCGGAAAUGCUUCUGCUACAUUUUUAGGGUCUCCCUCCAUAUAUUUUU
Get precursor sequence
|
Structure | 10 20 30 40 50
AGUCUUUCCAAAUAACA--| U C UG U AACUAGAGG
CUCUA GAAU UAG GAA CAUUUCUGCACA A
GGGAU UUUA AUC CUU GUAAAGGCGUGU U
UUUUUAUAUACCUCCCUCU^ U C GU C GACCAAAGU
. 110 100 90 80 70 60 |
Deep sequencing |
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|
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
|
Star sequence |
Gja-Mir-147-P3a-v1_5p* |
mirBase accession | None |
Sequence |
0- GUGGAAUCAUUUCUGCACAAAC -22
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|
Mature sequence |
Gja-Mir-147-P3a-v1_3p |
mirBase accession | None |
Sequence |
38- GUGUGCGGAAAUGCUUCUGCUA -60
Get sequence
|