MirGeneDB 3.0
MirGeneDB ID

Rno-Mir-147

Family name MIR-147 (all species)
Species Norway rat (Rattus norvegicus)
MiRBase ID rno-mir-147
Paralogues
Orthologues Aca-Mir-147-v1  Ami-Mir-147-v1  Bta-Mir-147  Cja-Mir-147  Cli-Mir-147  Cmi-Mir-147  Cpi-Mir-147-v1  Cpo-Mir-147-v1  Dno-Mir-147-v1  Eca-Mir-147  Gga-Mir-147  Hsa-Mir-147-v1  Lch-Mir-147  Loc-Mir-147-v1  Mal-Mir-147-v1  Mdo-Mir-147  Mml-Mir-147  Mmr-Mir-147  Mmu-Mir-147  Neu-Mir-147  Oan-Mir-147  Ocu-Mir-147  Pab-Mir-147  Pbv-Mir-147-v1  Pma-Mir-147  Sha-Mir-147  Spt-Mir-147  Tgu-Mir-147  Tni-Mir-147 
Node of Origin (locus) Vertebrata
Node of Origin (family) Vertebrata
Genome context
(rn6)		 chr3: 114775353-114775411 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-147-v1)		 Mir-147-v1 chr3: 114775353-114775411 [+] UCSC Ensembl
Mir-147-v2 chr3: 114775354-114775410 [+] UCSC Ensembl
Variant

Rno-Mir-147-v1
Seed UGUGCGG
Precursor
(pre-Mir +30nt flank)		 
CUUUCUUCCAAAGAACACUCUAUGAAUCUAGUGGAAACACUUCUGCACAAACUCGAUUUUGAUGCCAGUGUGCGGAAAUGCUUCUGCUACAUUUUUAGGGUUUGCCUGCAUUCUUUGGA
Get precursor sequence
Structure
        10          20        30        40        50         
CUUUCUUCCAAAGAACA--|    U    C   UG   A  C         AACUCGAUU 
                   CUCUA GAAU UAG  GAA CA UUCUGCACA         \
                   GGGAU UUUA AUC  CUU GU AAGGCGUGU         U
AGGUUUCUUACGUCCGUUU^    U    C   GU   C  A         GACCGUAGU 
       110       100        90        80        70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
Dr Dr Ad Bi Bi Bi Bi Br Br Br Br Ce Ce Ce Ce Co Co Co Co Du Du Du Du Fa He He He Hi Hi Il Il Je Je Ki Ki Ki Ki Ki La Li Li Li Li Li Li Lu Me Me Mu Ov Pa Pa Pa Sk Sm So So So So Sp St St St St Te Te Th Ut Wh
Star sequence

Rno-Mir-147-v1_5p*
mirBase accessionNone
Sequence 
0- GUGGAAACACUUCUGCACAAACU -23
Get sequence
Mature sequence

Rno-Mir-147-v1_3p
mirBase accessionMIMAT0005297
Sequence 
37- GUGUGCGGAAAUGCUUCUGCUA -59
Get sequence
Proposed targets microrna.org: MIMAT0005297
TargetScanVert: rno-miR-147
miRDB: MIMAT0005297
Variant

Rno-Mir-147-v2
Seed GUGUGCG
Precursor
(pre-Mir +30nt flank)		 
UUUCUUCCAAAGAACACUCUAUGAAUCUAGUGGAAACACUUCUGCACAAACUCGAUUUUGAUGCCAGUGUGCGGAAAUGCUUCUGCUACAUUUUUAGGGUUUGCCUGCAUUCUUUGG
Get precursor sequence
Structure
        10          20        30        40        50        
UUUCUUCCAAAGAACAC--|   U    C   UG   A  C         AACUCGAUU 
                   UCUA GAAU UAG  GAA CA UUCUGCACA         \
                   GGAU UUUA AUC  CUU GU AAGGCGUGU         U
GGUUUCUUACGUCCGUUUG^   U    C   GU   C  A         GACCGUAGU 
     110       100        90        80        70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
Dr Dr Ad Bi Bi Bi Bi Br Br Br Br Ce Ce Ce Ce Co Co Co Co Du Du Du Du Fa He He He Hi Hi Il Il Je Je Ki Ki Ki Ki Ki La Li Li Li Li Li Li Lu Me Me Mu Ov Pa Pa Pa Sk Sm So So So So Sp St St St St Te Te Th Ut Wh
Star sequence

Rno-Mir-147-v2_5p*
mirBase accessionNone
Sequence 
0- UGGAAACACUUCUGCACAAACU -22
Get sequence
Mature sequence

Rno-Mir-147-v2_3p
mirBase accessionMIMAT0005297
Sequence 
35- AGUGUGCGGAAAUGCUUCUGCU -57
Get sequence
Proposed targets microrna.org: MIMAT0005297
TargetScanVert: rno-miR-147
miRDB: MIMAT0005297